CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021871_P002	Maize	plastid	90.23	91.8
TraesCS2B01G269700.1	Wheat	plastid	81.32	81.62
HORVU2Hr1G056820.1	Barley	plastid	81.32	81.32
Os07t0213300-01	Rice	cytosol	67.16	81.24
TraesCS2D01G244500.3	Wheat	plastid	81.32	79.47
TraesCS2A01G239500.2	Wheat	plastid	81.56	78.22
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	62.39	60.98
VIT_08s0007g08590.t01	Wine grape	cytosol	59.46	57.16
KRH66918	Soybean	cytosol	57.39	56.15
AT2G41720.1	Thale cress	cytosol, plastid	55.07	54.87
Bra004642.1-P	Field mustard	cytosol, plastid	53.36	53.42
CDY23832	Canola	plastid	53.36	53.42
Solyc04g015950.1.1	Tomato	plastid	55.31	53.29
CDX79920	Canola	cytosol, plastid	53.11	53.24
KRG95241	Soybean	plastid	39.93	48.02
KXG20531	Sorghum	plastid	20.63	21.78
OQU77078	Sorghum	mitochondrion	12.09	20.04
KXG36606	Sorghum	plastid	18.56	19.66
EER99505	Sorghum	plastid	15.02	18.41
KXG40345	Sorghum	plastid	10.87	18.31
OQU84443	Sorghum	cytosol	13.43	18.18
KXG30749	Sorghum	plastid	10.99	18.07
EER87934	Sorghum	plastid	10.62	17.68
OQU86802	Sorghum	cytosol	6.23	16.5
EER97871	Sorghum	plastid	10.99	16.07
EES16159	Sorghum	plastid	16.97	15.94
OQU90703	Sorghum	plastid	16.97	15.5
EES13486	Sorghum	plastid	11.23	15.28

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1B6QF52	GO:GO:0000003	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009507	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010239	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG36530	ProteinID:KXG36530	ProteinID:KXG36530.1
ProteinID:OQU90139.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1614	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G347600	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00081AEAC9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:71290012..71298531

Molecular Weight (calculated)

92342.9 Da

IEP (calculated)

9.069

GRAVY (calculated)

-0.216

Length

819 amino acids

Sequence
(BLAST)

001: MSSAPPPPPS LNPDAPPRVV RAPPRRPPPR APGPPPWAER RPAVSVDLDR GRRWVRTEVD GVRAASLPAR HRLRVEGNRW QRDWKVSEVA ARVLALPPAD
101: AHAVDAVLNC WAGRFARRNF PLLIREITIS GSLKHAVHVF RWMKIQENYC ARNDIYGMMI RLHARHNQVD QARGLFFEMQ EWRCKPDTDT YNSLIHAHAR
201: AGQWRWAINI MDDMQRAAIP PSRTTYNNVI NACGAAGNWK KALELCKKMT ENGVGPDLIT HNIVLSAFKN GAQYSKAIAY FEIMKSSKVA PDTCTMNIVI
301: HCLVKVALYG EAIELFNSMR ERRTICPPDV VTYTSIMYSY SVCGQAENCK AVFDMMVAEG VRPNIVSYNA LLGAYASHGM HTEALETFKL LKQNGFKPDI
401: VSYTSLLNAY GRSALPEKAR EVFNEMRKNA CKPNKVSYNA LIDAYGSAGM LKEAISLLHE MEQDGIQPDV ISISTLLTAC GRCRQPTKIG IILAAAKSRG
501: IQLNTVAYNS GIGSYLSLGD YKKALELYTS MRTGNVKPDA VTYNILISGS CKLGRYVESL NFFEDMMDLN IHLTKEVYSS VICSYVKQGK LTEAASTFNS
601: MKESGCFPDV LTYTTMIKAY SDDGSWRRAW DLFKEMESND IQPDAIVCSS LMEALNKGGQ PERVLQLMEF MKQKQIQLNQ KAYFEIISSC TMLRDWKTAS
701: QIIEHLDSSL SSISFGTLNH ILNFLGKCGR TESMMKLFYK MVTACSTVGL STYTILLRNL LVVGKWRKYV EVLQWMEDAG ICPTLYMYQN VLPYIWRDNS
801: MDYVTLMQEK INALREKVT

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.