Factsheet for Os07t0213300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36530	Sorghum	plastid	81.24	67.16
TraesCS2B01G269700.1	Wheat	plastid	80.06	66.42
HORVU2Hr1G056820.1	Barley	plastid	79.47	65.69
TraesCS2D01G244500.3	Wheat	plastid	79.91	64.56
Zm00001d021871_P002	Maize	plastid	76.22	64.1
TraesCS2A01G239500.2	Wheat	plastid	79.47	63.0
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	63.22	51.07
KRH66918	Soybean	cytosol	60.86	49.22
VIT_08s0007g08590.t01	Wine grape	cytosol	61.89	49.18
AT2G41720.1	Thale cress	cytosol, plastid	58.49	48.18
Bra004642.1-P	Field mustard	cytosol, plastid	57.9	47.92
CDY23832	Canola	plastid	57.9	47.92
CDX79920	Canola	cytosol, plastid	57.46	47.61
Solyc04g015950.1.1	Tomato	plastid	59.38	47.29
KRG95241	Soybean	plastid	40.33	40.09
Os05t0275000-01	Rice	cytosol, plastid	23.04	19.67
Os02t0170000-02	Rice	cytosol	13.44	19.4
Os07t0590600-00	Rice	plastid	21.86	18.88
Os06t0710800-01	Rice	cytosol	13.44	18.5
Os03t0115300-00	Rice	plastid	12.7	17.55
Os02t0750400-01	Rice	cytosol	5.32	16.98
Os03t0309800-02	Rice	plastid	12.26	16.57
Os06t0172000-01	Rice	plastid	11.96	15.85
Os07t0548300-01	Rice	plastid	15.07	15.81
Os08t0191900-01	Rice	plastid	12.85	14.29
Os03t0824100-01	Rice	plastid	17.73	13.82
Os12t0562300-01	Rice	cytosol	4.58	10.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4342717	EMBL:AK120512	ProteinID:BAF21094.2	ProteinID:BAT00610.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010239	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os07g0213300	EnsemblPlants:Os07t0213300-01	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614	InterPro:Pentatricopeptide_repeat
UniProt:Q0D7S9	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000188AF23	RefSeq:XP_015646657.1
RefSeq:XP_015646658.1	RefSeq:XP_015646659.1	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os07t0213300-01);Similar to cDNA clone:J013123O09, full insert sequence. (Os07t0213300-02)

Coordinates

chr7:-:6222175..6231669

Molecular Weight (calculated)

76309.4 Da

IEP (calculated)

8.728

GRAVY (calculated)

-0.198

Length

677 amino acids

Sequence
(BLAST)

001: MKNQDNYCAR NDIYGMMIRL YARHNQVDQA RGLFFEMQEW RCKPDADIYN SLIHAHSRAG QWRWAINIME DMLRAAIPPT RTTYNNVINA CGAAGNWKKA
101: LELCKKMTEN GVGPDLVTHN IVLSALKNGA QYSKAISYFE IMKGANVTSD TFTLNIIIHC LVKIGQCGEA IELFNSMRER RTKCPPDVVT YTSIMHSYCI
201: YGQVENCKAI FDLMVAEGVK PNIVAYNSLL GAYASRGMHR EALAIFNLIK KNGLRPDIVS YTSLLNAYGR SAQPEKAREV FNKMKKNSCK PNKVSYNALI
301: DAYGSAGMLK EAVGLLHEME KDGIQPDVVS ISTLLAACGR CRQITRIETI LEAARSRGID LNTVAYNSGI KSYLSFGDYE KALELYTSMR ESNVKPDAVT
401: YNILISGSSK LGKYTESLRF FEDMVDSKVS STKEVYSSLI YSYIKQGKLS EAESTFSSMK KSGCFPDVLT YTTLIQAYNA GGGWKRAWDL FKEMEVNGIP
501: PDAIICSSLM EAFNKGGEPE RVLQLMEFMK KKSIPLNQKS YFEIIASCTM IRDWKTASEM IEYLDSSLSS ISVGTLNHVL NFLGKCGKTE NMMKLFYKMV
601: TSCSTVGLST YAVVLRNLLV VGKWRKYIEV LQWMEDSGVH PTLYMFQNVL PYIWRENGMD FAATMQEKIS SLRDKQT

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.