Factsheet for Os08t0191900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13486	Sorghum	plastid	84.24	85.22
Zm00001d024248_P001	Maize	plastid	81.94	83.17
TraesCS3A01G523700.1	Wheat	plastid	81.44	81.58
TraesCS3D01G529200.1	Wheat	plastid	81.28	81.01
TraesCSU01G054500.1	Wheat	cytosol, plastid	81.12	80.85
HORVU3Hr1G114340.4	Barley	mitochondrion	80.62	77.44
CDY06027	Canola	plastid	55.83	64.03
PGSC0003DMT400041148	Potato	plastid	59.93	63.81
VIT_12s0028g01140.t01	Wine grape	cytosol	57.31	63.69
CDX71917	Canola	plastid	56.65	63.3
Solyc07g043600.2.1	Tomato	nucleus	60.1	63.1
KRH36131	Soybean	plastid	55.66	61.3
KRG90623	Soybean	nucleus	55.66	60.32
AT3G59040.2	Thale cress	endoplasmic reticulum	56.16	57.97
CDX98345	Canola	cytosol	24.3	47.59
GSMUA_Achr8P07220_001	Banana	cytosol	70.11	39.25
Os02t0170000-02	Rice	cytosol	16.09	20.9
Os03t0115300-00	Rice	plastid	15.6	19.39
Os06t0710800-01	Rice	cytosol	13.96	17.28
Os06t0172000-01	Rice	plastid	14.12	16.83
Os07t0548300-01	Rice	plastid	16.75	15.81
Os03t0309800-02	Rice	plastid	12.97	15.77
Os02t0750400-01	Rice	cytosol	4.6	13.21
Os07t0590600-00	Rice	plastid	16.91	13.14
Os07t0213300-01	Rice	cytosol	14.29	12.85
Os05t0275000-01	Rice	cytosol, plastid	16.09	12.36
Os03t0824100-01	Rice	plastid	14.29	10.02
Os12t0562300-01	Rice	cytosol	3.12	6.21

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.6	EntrezGene:4344860	EMBL:AK067587	EMBL:AK099016	ProteinID:BAD05595.1
ProteinID:BAF23088.1	ProteinID:BAT04182.1	ProteinID:EAZ41777.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlantsGene:Os08g0191900	EnsemblPlants:Os08t0191900-01	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF722	InterPro:Pentatricopeptide_repeat	UniProt:Q6Z1D0	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000022F29A	RefSeq:XP_015648115.1	SEG:seg	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os08t0191900-01)

Coordinates

chr8:+:5384447..5388799

Molecular Weight (calculated)

69522.1 Da

IEP (calculated)

7.846

GRAVY (calculated)

-0.572

Length

609 amino acids

Sequence
(BLAST)

001: MEAAAAIGGA RSPLSFSSSL CNAKVSCGLA LHNVKIKSSR RLEVVCHGML TTRKFMQKKK KEEVYKDAAD EAEQKNWRMM MREIEESGSA VSILKTQRSK
101: KEPLPRDAVL GTLMRFKQLK KWNLVSEILE WLRTQHWWNF SEMDFLMLVT AYGKLGDFSR AERVLKYMNK KGYKPSVISQ TALMEAYGRA KQYRKAEAVF
201: RRMQTSGPEP SAVTYQIILK SFVEGDKYKE AEAIFEDLLN EKRASFKPDQ KMFHMMIYMY KKAGDYAQAR KLFAQMSERG IPLSTVTFNS LMSFETNYKE
301: VSSIYDQMQR TALKPDVVSY SLLIKAYGKA RREEEALAVF EEMLDAGVRP TRKSYNILID AFAISGLVEE AHTVFKAMRR HRVEPDLCSY TTMVLAYVNA
401: SDMDGAEKFF RRIKEDGLKP NVVVYGTLMK GYSKLNNVER VMRVYERMRM QGVEPNQTIY TTIMDVHGRN SDFGNAVIWF KEMEARGYPA DKKAKNILLS
501: LAKTPEEQEE ANELTGNCAI QLEAKPDGTT YGLEINGTGN EYKHGQNDAG HDSLLDGACT TSNRNGKVEA GKGHFEEVND DDDDDDDDDY DEELNFVSFK
601: DKRELNFAT

Best Arabidopsis Sequence Match ( AT3G59040.2 )
(BLAST)

001: MFFSFRLLKV LVFHLQIRPC VLLCVSQRKL QNNIINVGVK IQNRFRVVCM GMLAPRKFLQ KRRKMEVFKD AADETDQKRW RGLMLEIEST GSAVPVLRQY
101: KTDGDQGLPR DLVLGTLVRF KQLKKWNLVS EILEWLRYQN WWNFSEIDFL MLITAYGKLG NFNGAERVLS VLSKMGSTPN VISYTALMES YGRGGKCNNA
201: EAIFRRMQSS GPEPSAITYQ IILKTFVEGD KFKEAEEVFE TLLDEKKSPL KPDQKMYHMM IYMYKKAGNY EKARKVFSSM VGKGVPQSTV TYNSLMSFET
301: SYKEVSKIYD QMQRSDIQPD VVSYALLIKA YGRARREEEA LSVFEEMLDA GVRPTHKAYN ILLDAFAISG MVEQAKTVFK SMRRDRIFPD LWSYTTMLSA
401: YVNASDMEGA EKFFKRIKVD GFEPNIVTYG TLIKGYAKAN DVEKMMEVYE KMRLSGIKAN QTILTTIMDA SGRCKNFGSA LGWYKEMESC GVPPDQKAKN
501: VLLSLASTQD ELEEAKELTG IRNETATIIA RVYGSDDDEE GVEDISSESS DDEDEGDDDD DDARETVLYD KPQEGSLGYG SLQTEELVGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.