CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06027	Canola	plastid	92.29	94.73
AT3G59040.2	Thale cress	endoplasmic reticulum	86.97	80.34
VIT_12s0028g01140.t01	Wine grape	cytosol	65.87	65.51
PGSC0003DMT400041148	Potato	plastid	68.44	65.21
KRH36131	Soybean	plastid	65.87	64.92
KRG90623	Soybean	nucleus	66.42	64.41
Solyc07g043600.2.1	Tomato	nucleus	68.26	64.14
CDX98345	Canola	cytosol	36.51	63.99
Os08t0191900-01	Rice	plastid	63.3	56.65
TraesCS3A01G523700.1	Wheat	plastid	62.94	56.41
EES13486	Sorghum	plastid	62.02	56.15
Zm00001d024248_P001	Maize	plastid	61.47	55.83
TraesCS3D01G529200.1	Wheat	plastid	62.57	55.81
TraesCSU01G054500.1	Wheat	cytosol, plastid	62.39	55.65
HORVU3Hr1G114340.4	Barley	mitochondrion	62.2	53.47
GSMUA_Achr8P07220_001	Banana	cytosol	65.14	32.63
CDX78150	Canola	plastid	16.7	18.76
CDY24692	Canola	plastid	15.96	18.12
CDX73576	Canola	plastid	16.51	18.04
CDX71198	Canola	cytosol	18.35	17.67
CDY05264	Canola	plastid	15.78	17.55
CDX85360	Canola	plastid	15.96	17.23
CDY31666	Canola	cytosol	19.45	17.01
CDX86283	Canola	plastid	15.6	16.73
CDX84260	Canola	cytosol, nucleus, plastid	19.45	16.49
CDY64953	Canola	cytosol	8.62	16.15
CDY31603	Canola	plastid	18.9	15.54
CDX71562	Canola	mitochondrion, plastid	18.72	14.59
CDY32056	Canola	plastid	21.47	14.46
CDX74617	Canola	mitochondrion	9.17	14.24
CDY41990	Canola	plastid	12.11	14.01
CDY42639	Canola	plastid	12.11	13.66
CDY19091	Canola	cytosol	17.25	12.89
CDY56509	Canola	plastid	19.27	12.84
CDY29249	Canola	plastid	19.08	12.73
CDX73117	Canola	plastid	18.53	11.7
CDY15384	Canola	cytosol	8.99	11.5
CDY45398	Canola	plastid	18.17	11.46
CDY10802	Canola	plastid	17.8	11.43
CDY56616	Canola	plastid	15.96	11.03
CDY23832	Canola	plastid	16.15	10.76
CDX79920	Canola	cytosol, plastid	15.96	10.65
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX71917	EnsemblPlantsGene:GSBRNA2T00155662001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF722
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX71917	ProteinID:CDX71917.1
SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EF18D6	MapMan:16.12.4.6	:

Description

BnaC08g29570D

Coordinates

chrLK031795:+:1241698..1247024

Molecular Weight (calculated)

62144.3 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.276

Length

545 amino acids

Sequence
(BLAST)

001: MSQTVIFKPF VSVPSSNLSQ GKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADEVDQ KRWRGLMLEI ESTGSAVSVL RQYRTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEM DFLMLITAYG KLGNFNGAER VLSVLSKMGS SPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAV TYQIILKTFV EGNKFKEAEE VFETLLDEKI SPLKPDQKMY HMMIYMYKKA GNYEKARKVF ASMAEKGVPQ STVTYNSLMS FETNYKEVSK
301: IYDQMQRSGI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRF YPDLCSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNLV TYGTMIKGYA KANDLDKVME VYEKMRLSGI KANQTILTTI MDASGRCKDF GSALSWYKEM ESCGVPPDQK AKNVLLSLAS
501: SQDELEEAKE VTVNAFNGAC KHILTFQFSA TTIFFLFHIH HFHLA

Best Arabidopsis Sequence Match ( AT3G59040.1 )
(BLAST)

001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.