CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85360	Canola	plastid	96.65	97.23
Bra037464.1-P	Field mustard	plastid	98.43	93.46
AT5G48730.1	Thale cress	plastid	89.76	89.76
VIT_07s0005g06720.t01	Wine grape	cytosol	60.43	77.53
PGSC0003DMT400082022	Potato	plastid	66.54	69.26
Solyc01g006500.2.1	Tomato	plastid	66.34	69.06
KRH46714	Soybean	plastid	65.75	64.85
GSMUA_Achr1P15160_001	Banana	plastid	62.01	64.15
Zm00001d037476_P001	Maize	plastid	58.27	60.16
EER87934	Sorghum	plastid	58.07	59.96
HORVU7Hr1G027800.8	Barley	cytosol	56.89	59.59
Os06t0172000-01	Rice	plastid	59.45	59.1
TraesCS7B01G033900.1	Wheat	plastid	58.46	58.58
TraesCS7A01G133100.1	Wheat	plastid	58.27	58.27
CDX78150	Canola	plastid	39.17	41.03
CDX73576	Canola	plastid	38.58	39.28
CDY24692	Canola	plastid	33.86	35.83
CDY05264	Canola	plastid	34.06	35.31
CDY41990	Canola	plastid	22.24	23.99
CDY42639	Canola	plastid	22.24	23.4
CDY64953	Canola	cytosol	10.04	17.53
CDX71198	Canola	cytosol	19.49	17.49
CDY06027	Canola	plastid	16.73	16.01
CDX71917	Canola	plastid	16.73	15.6
CDX98345	Canola	cytosol	9.25	15.11
CDX74617	Canola	mitochondrion	10.24	14.81
CDX84260	Canola	cytosol, nucleus, plastid	18.5	14.62
CDY31666	Canola	cytosol	17.72	14.45
CDY31603	Canola	plastid	18.11	13.88
CDY32056	Canola	plastid	22.05	13.84
CDY56509	Canola	plastid	22.05	13.69
CDY29249	Canola	plastid	21.85	13.59
CDX71562	Canola	mitochondrion, plastid	18.11	13.16
CDY15384	Canola	cytosol	11.02	13.15
CDY45398	Canola	plastid	20.47	12.04
CDX73117	Canola	plastid	20.28	11.94
CDY19091	Canola	cytosol	16.73	11.66
CDY56616	Canola	plastid	17.52	11.28
CDY10802	Canola	plastid	18.7	11.19
CDY23832	Canola	plastid	15.94	9.9
CDX79920	Canola	cytosol, plastid	15.35	9.55
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX86283	ProteinID:CDX86283	ProteinID:CDX86283.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00144395001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF664
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF3E7D	SEG:seg	:

Description

BnaA06g30000D

Coordinates

chrLK031845:-:758479..760177

Molecular Weight (calculated)

58051.5 Da

IEP (calculated)

9.416

GRAVY (calculated)

-0.339

Length

508 amino acids

Sequence
(BLAST)

001: MVSLSTSTSH AHPLPSAYNR RPAERDVTVR CVSFSPREPK HTSNGPSLAL RETRQRKWVK STEEAKERYS KEIQDEMNSK IASRKAISII LRREATKAII
101: EKKKGPTNSK KLLPRTVLEA LHERITALRW ESALQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH QLFQEMIGEG CVVNHEVYTA LLSAYSRSGR
201: FDDAFTLLEL MKSSHNCQPD VHTYSILIKS FLQVFAFDEV QALLSDMGRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKT GNYKKMSAVM EFMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIKPSCVTL
401: CSLVRAYGRA GKADKIGGVL RFIENSDVRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTSHVKELD GVVESVGEAQ
501: VVLKKPDF

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.