Factsheet for Zm00001d037476_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87934	Sorghum	plastid	94.51	94.51
Os06t0172000-01	Rice	plastid	83.74	80.63
HORVU7Hr1G027800.8	Barley	cytosol	77.85	78.97
TraesCS7A01G133100.1	Wheat	plastid	81.1	78.54
TraesCS7B01G033900.1	Wheat	plastid	80.28	77.91
VIT_07s0005g06720.t01	Wine grape	cytosol	54.06	67.17
GSMUA_Achr1P15160_001	Banana	plastid	63.82	63.95
PGSC0003DMT400082022	Potato	plastid	59.76	60.25
Solyc01g006500.2.1	Tomato	plastid	59.15	59.63
KRH46714	Soybean	plastid	61.99	59.22
CDX86283	Canola	plastid	60.16	58.27
CDX85360	Canola	plastid	59.55	58.02
AT5G48730.1	Thale cress	plastid	59.55	57.68
Bra037464.1-P	Field mustard	plastid	59.96	55.14
Zm00001d027349_P001	Maize	plastid	38.01	38.56
Zm00001d018693_P001	Maize	plastid	35.98	31.0
Zm00001d052240_P001	Maize	plastid	20.73	20.44
Zm00001d015377_P003	Maize	plastid	18.5	15.24
Zm00001d024248_P001	Maize	plastid	18.09	14.83
Zm00001d022003_P001	Maize	plastid	23.58	14.59
Zm00001d014751_P003	Maize	plastid	15.65	14.47
Zm00001d021716_P001	Maize	plastid	18.9	13.92
Zm00001d036698_P001	Maize	plastid	21.75	13.61
Zm00001d022599_P002	Maize	plastid	20.93	11.52
Zm00001d030624_P001	Maize	plastid	19.72	11.15
Zm00001d021871_P002	Maize	plastid	17.07	10.43

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103630024	MapMan:35.1	UniProt:A0A1D6LY52	ProteinID:AQK84070.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF664	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002216815	EnsemblPlantsGene:Zm00001d037476	EnsemblPlants:Zm00001d037476_P001	EnsemblPlants:Zm00001d037476_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein chloroplastic

Coordinates

chr6:+:126489261..126491991

Molecular Weight (calculated)

55777.9 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.325

Length

492 amino acids

Sequence
(BLAST)

001: MADGPVTATS SMAVPSARRN RALLPTVSVA REPARAWAAA GAEGRARRGK EAEVEDEKEA GRRRKEEVNR KIASRKALSV ILRREATKAV LDKRKPGKGT
101: RRLLPGTVLE ALHDRVAALR WDSALKVFEL MRDQVWYKPH IGIYIKLITM LGKCKQPEKA HQLFQAMIDE GCAPNLQSYT ALVSTYSRSG RFREAFDLLD
201: RMKDTPGCQP DVQTYSILIK SCLHAYDFEK VKSLLADMAR AGIPPNTVTY NTLIDAYGKA GRFAEMESTL LKMLSQNCKP DVWTMNSTLR AFGSSGQIET
301: MESCYEKFQA SGIVPNIKTY NILLDSYGKA KMYEKMGAVM EYMQKYYYSW TIVTYNVVID AFGRAGDLEQ MEYIFRLMKS ERIKPNCVTL CSVVRAYGRA
401: GEVKKIKTAL RIIENSDITL DIVFFNCLVD AYGRVGCLAE MWDILDLMKE HRCKPDKVTC TTMIKWFLIK GIDDHRVQYL RDLKDGRAKD DT

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.