Factsheet for Os06t0172000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87934	Sorghum	plastid	82.0	85.16
TraesCS7B01G033900.1	Wheat	plastid	84.34	85.01
TraesCS7A01G133100.1	Wheat	plastid	84.15	84.65
Zm00001d037476_P001	Maize	plastid	80.63	83.74
HORVU7Hr1G027800.8	Barley	cytosol	76.91	81.03
VIT_07s0005g06720.t01	Wine grape	cytosol	52.25	67.42
GSMUA_Achr1P15160_001	Banana	plastid	64.19	66.8
PGSC0003DMT400082022	Potato	plastid	58.32	61.07
KRH46714	Soybean	plastid	61.45	60.97
Solyc01g006500.2.1	Tomato	plastid	57.73	60.45
CDX85360	Canola	plastid	59.1	59.8
CDX86283	Canola	plastid	59.1	59.45
AT5G48730.1	Thale cress	plastid	58.71	59.06
Bra037464.1-P	Field mustard	plastid	59.49	56.82
Os03t0115300-00	Rice	plastid	37.18	38.78
Os03t0309800-02	Rice	plastid	34.44	35.13
Os02t0170000-02	Rice	cytosol	16.63	18.12
Os06t0710800-01	Rice	cytosol	16.05	16.67
Os02t0750400-01	Rice	cytosol	6.46	15.57
Os07t0590600-00	Rice	plastid	22.31	14.54
Os08t0191900-01	Rice	plastid	16.83	14.12
Os07t0548300-01	Rice	plastid	17.81	14.11
Os05t0275000-01	Rice	cytosol, plastid	20.94	13.49
Os03t0824100-01	Rice	plastid	21.14	12.44
Os07t0213300-01	Rice	cytosol	15.85	11.96
Os12t0562300-01	Rice	cytosol	5.09	8.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4340271	EMBL:AK068738	ProteinID:BAD72273.1	ProteinID:BAF18853.1
ProteinID:BAS96388.1	ProteinID:EEE65178.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os06g0172000
EnsemblPlants:Os06t0172000-01	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF664
InterPro:Pentatricopeptide_repeat	UniProt:Q5SND3	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000046D468	RefSeq:XP_015641294.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os06t0172000-01)

Coordinates

chr6:+:3640786..3643222

Molecular Weight (calculated)

57739.0 Da

IEP (calculated)

9.444

GRAVY (calculated)

-0.308

Length

511 amino acids

Sequence
(BLAST)

001: MAAAPVASPF PALPSSSSST TIAASTAARR CHDALLPPPA AAGREPARTR GSSSSLAGAA GERRRRRGEE DGGEVEAEAE RRRKEEVNRK IASRKALSVI
101: LRREATKAVL DKRKPGKGTR RLLPRTVLEA LHERITALRW DSALKVFDLM RDQVWYRPYV GIYVKLITML GKCKQPERAH ELFQAMVDEG CAPNLESYTA
201: LVSAYSRSGR FDRAFSLLEQ MKATPGCRPD VQTYSILIKS CLHAYDFERV KYLMEDMARA GIRPNVVTYN TLIDAYGKAG RFAEMESTLL EMLTENCKPD
301: VWTMNSTLRA FGGSGQIETM ESCYEKFQAS GISPNIKTYN ILLDSYGKAK MYEKMGAVME YMQKYYYSWT IVTYNVVIDA FGRAGDLEQM EYIFRLMKSE
401: RIKPNCVTLC SLVRAYGRAG DVKKIKTVLR IVENSDITLD IVFFNCLVDA FGRVGCLAEM WDVLDIMKLQ RCKPDKVTCT TMIKWFLIKG IDDHRVQYLR
501: DLKDGRSKDN I

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.