Factsheet for VIT_07s0005g06720.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082022	Potato	plastid	75.51	61.27
Solyc01g006500.2.1	Tomato	plastid	75.25	61.07
CDX86283	Canola	plastid	77.53	60.43
CDX85360	Canola	plastid	76.52	60.0
AT5G48730.1	Thale cress	plastid	76.52	59.65
KRH46714	Soybean	plastid	75.76	58.25
Bra037464.1-P	Field mustard	plastid	77.53	57.38
GSMUA_Achr1P15160_001	Banana	plastid	70.96	57.23
HORVU7Hr1G027800.8	Barley	cytosol	67.93	55.46
Zm00001d037476_P001	Maize	plastid	67.17	54.06
EER87934	Sorghum	plastid	67.17	54.06
TraesCS7B01G033900.1	Wheat	plastid	67.17	52.47
TraesCS7A01G133100.1	Wheat	plastid	67.17	52.36
Os06t0172000-01	Rice	plastid	67.42	52.25
VIT_13s0064g00400.t01	Wine grape	cytosol	48.23	38.59
VIT_05s0020g00690.t01	Wine grape	plastid	43.69	34.74
VIT_07s0031g01360.t01	Wine grape	plastid	22.98	18.61
VIT_01s0011g01970.t01	Wine grape	cytosol	24.49	16.67
VIT_16s0039g02560.t01	Wine grape	cytosol	19.44	15.71
VIT_12s0028g01140.t01	Wine grape	cytosol	20.96	15.15
VIT_03s0091g00440.t01	Wine grape	plastid	26.26	12.82
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	21.21	12.09
VIT_11s0052g00600.t01	Wine grape	plastid	24.49	11.81
VIT_17s0000g07500.t01	Wine grape	plastid	23.23	10.59
VIT_08s0007g08590.t01	Wine grape	cytosol	20.45	9.51
VIT_07s0005g01660.t01	Wine grape	plastid	19.95	9.11

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100241357	wikigene:100241357	MapMan:35.1	ProteinID:CCB60293	ProteinID:CCB60293.1
UniProt:F6I027	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100241357
wikigene:LOC100241357	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF664	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210A567	ArrayExpress:VIT_07s0005g06720
EnsemblPlantsGene:VIT_07s0005g06720	EnsemblPlants:VIT_07s0005g06720.t01	RefSeq:XP_002269420	RefSeq:XP_002269420.2	:	:

Description

No Description!

Coordinates

chr7:-:12160404..12162660

Molecular Weight (calculated)

45154.5 Da

IEP (calculated)

8.605

GRAVY (calculated)

-0.157

Length

396 amino acids

Sequence
(BLAST)

001: MFNLRLNSYA LDPRGLGFGE WQVFELLREQ LWYRPNSGIY IKLIVMLGKC KQPEKAHALF LAMIDEGCVV NHEAYTALLS AYSRSGLFDK AFSLLEKMKN
101: TPDCQPDVHT YSVLIKSCLQ VVAFDKVPVL LSDMANQGIK PNTVTYNTLI DAYGKAKRFA EMESTLLEML REGKCEPDVW TMNSTLRAFG SSGQIETMEK
201: CYEKFQSAGI EPNIKTFNIL LDSYGKAEKY EKMSAVMEYM QKYHFSWTIV TYNVVIDAFG RAGDLKQMEY LFRLMRSERI KPSCVTLCSL VRAYGRAGKA
301: EKIGGVLRFI ENSDVMLDIV FFNCLVDAYG RLGCFAEMKG VLEMMKKKGC KPDKITYRTM IKAYKIGGMT SCAKELQGLM RMPDETRLEM GKPDFR

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.