Factsheet for VIT_05s0020g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01
VIT_07s0129g01050.t01
VIT_08s0007g06670.t01
VIT_09s0002g00720.t01
VIT_13s0156g00260.t01
VIT_14s0068g01520.t01
VIT_15s0021g01880.t01
VIT_16s0022g00510.t01
VIT_17s0000g06570.t01
VIT_18s0001g09850.t01
VIT_19s0015g01810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944
AT3G06430.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT3G06430.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT3G06430.1	VIT_09s0002g00720.t01	AT3G14180.1	21798944
AT3G06430.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT3G06430.1	VIT_08s0007g06670.t01	AT5G06710.1	21798944
AT3G06430.1	VIT_13s0156g00260.t01	AT5G06710.1	21798944
AT3G06430.1	VIT_14s0068g01520.t01	AT5G41070.1	21798944
AT3G06430.1	VIT_15s0021g01880.t01	AT5G47370.1	21798944
AT3G06430.1	VIT_19s0015g01810.t01	AT5G56250.1	21798944
AT3G06430.1	VIT_17s0000g06570.t01	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24692	Canola	plastid	72.49	75.21
AT3G06430.1	Thale cress	plastid	72.69	74.49
Bra020748.1-P	Field mustard	plastid	72.49	73.52
KRH02451	Soybean	plastid	71.69	73.16
CDY05264	Canola	plastid	71.89	73.06
KRH02371	Soybean	plastid	71.49	72.95
PGSC0003DMT400011734	Potato	plastid	69.48	69.9
Solyc12g098990.1.1	Tomato	plastid	68.88	69.29
PGSC0003DMT400022191	Potato	plastid	68.07	67.66
Solyc01g057200.2.1	Tomato	plastid	63.25	67.02
GSMUA_Achr11P...	Banana	plastid	70.08	64.27
Os03t0309800-02	Rice	plastid	60.84	60.48
KRH37687	Soybean	plastid	58.63	60.21
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	59.04	55.79
TraesCS4D01G132900.3	Wheat	plastid	59.64	54.9
TraesCS4A01G178100.5	Wheat	plastid	59.24	54.53
EER97871	Sorghum	plastid	61.04	54.29
Zm00001d018693_P001	Maize	plastid	59.84	52.19
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	59.44	51.21
VIT_07s0005g06720.t01	Wine grape	cytosol	34.74	43.69
VIT_13s0064g00400.t01	Wine grape	cytosol	35.54	35.76
VIT_07s0031g01360.t01	Wine grape	plastid	22.29	22.7
VIT_12s0028g01140.t01	Wine grape	cytosol	17.67	16.06
VIT_01s0011g01970.t01	Wine grape	cytosol	18.67	15.98
VIT_16s0039g02560.t01	Wine grape	cytosol	14.86	15.1
VIT_03s0091g00440.t01	Wine grape	plastid	22.69	13.93
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	18.47	13.24
VIT_11s0052g00600.t01	Wine grape	plastid	19.48	11.81
VIT_07s0005g01660.t01	Wine grape	plastid	19.68	11.3
VIT_17s0000g07500.t01	Wine grape	plastid	19.68	11.28
VIT_08s0007g08590.t01	Wine grape	cytosol	17.87	10.45

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100257907	wikigene:100257907	MapMan:35.1	EMBL:AM459961	ProteinID:CAN74604
ProteinID:CAN74604.1	ProteinID:CCB50289	ProteinID:CCB50289.1	UniProt:F6HE37	EMBL:FN595749	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507
GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009856	GO:GO:0009987	GO:GO:0016787	GO:GO:0019843	GO:GO:0048868	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100257907	wikigene:LOC100257907	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00015C76B4	ArrayExpress:VIT_05s0020g00690	EnsemblPlantsGene:VIT_05s0020g00690	EnsemblPlants:VIT_05s0020g00690.t01	unigene:Vvi.14263	RefSeq:XP_002274904
RefSeq:XP_002274904.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:2561719..2563987

Molecular Weight (calculated)

56238.5 Da

IEP (calculated)

8.493

GRAVY (calculated)

-0.447

Length

498 amino acids

Sequence
(BLAST)

001: MASISLSFSS SLLPSPLLQD KNKATSATKP RDHHGSLCGV VRCAFASPAR RKTSSTPSSS SSSSAVGKKR LWKQGEFPGT SAEGRSRKTP IKNIKKKLDR
101: KNDAKAWANT VAEALSDLVL KKQWLQALEV FEMLREQPFY QPKEGTYMKL LVLLGKSGQP LRAHELFDTM VEEGCEPTTE LYTALLASYC RSNLIDEAFS
201: ILNQMKTLPR CQPDVFTYST LLKACVDASR FELVESLYEE MDVRSITPNT VTQNIVLSGY GKAGKFDEME KVLSGMLEST SSKPDVWTMN TILSLFGNKG
301: QIEIMEKWYE KFRNFGIEPE TRTFNILIGA YGKKRMYDKM SSVMEYMRKL QFPWTTSTYN NVIEAFSDVG DAKNMEYTFD QMRAEGMKAD TKTFCCLIRG
401: YANAGLFHKV VSSVQLAGKF EIPENTSFYN AVISACAKAE DLIEMERVFN RMKDKHCQPD STTYSIMVEA YKKEGMNDKI YDLEQERQRM VADGPKGD

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.