Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0091g00480.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | VIT_03s0091g00480.t01 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06514 | Canola | nucleus, plastid | 15.67 | 31.64 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 16.03 | 30.59 |
| CDY20740 | Canola | plastid | 16.03 | 30.18 |
| AT5G56250.1 | Thale cress | nucleus | 17.04 | 29.22 |
| CDY06515 | Canola | nucleus, plastid | 18.62 | 28.65 |
| Solyc07g066200.2.1 | Tomato | nucleus | 27.32 | 28.36 |
| PGSC0003DMT400056953 | Potato | nucleus | 28.11 | 28.03 |
| CDY36786 | Canola | nucleus, plastid | 15.17 | 28.02 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 15.17 | 28.02 |
| CDY11950 | Canola | nucleus | 15.03 | 27.5 |
| AT5G56240.3 | Thale cress | nucleus | 19.48 | 27.46 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 18.69 | 27.14 |
| CDY65749 | Canola | nucleus | 17.04 | 26.87 |
| CDY62101 | Canola | nucleus | 13.16 | 26.75 |
| CDY11951 | Canola | nucleus, plastid | 17.04 | 26.57 |
| CDY32803 | Canola | nucleus | 17.69 | 25.89 |
| CDY36785 | Canola | nucleus | 10.78 | 25.86 |
| Bra002831.1-P | Field mustard | nucleus | 11.07 | 25.67 |
| CDY32802 | Canola | nucleus | 11.07 | 25.67 |
| Bra002832.1-P | Field mustard | nucleus | 17.69 | 25.39 |
| Bra028942.1-P | Field mustard | nucleus | 17.47 | 25.34 |
| CDY17406 | Canola | nucleus, plastid | 16.89 | 25.19 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 16.1 | 24.09 |
| CDY36783 | Canola | cytosol | 2.01 | 23.53 |
| Os04t0471400-01 | Rice | nucleus | 20.06 | 22.52 |
| GSMUA_Achr10P... | Banana | nucleus | 17.69 | 22.42 |
| OQU81762 | Sorghum | nucleus | 19.48 | 21.93 |
| Zm00001d025668_P005 | Maize | nucleus | 18.84 | 21.15 |
| GSMUA_Achr10P... | Banana | nucleus | 17.11 | 21.08 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 18.69 | 21.05 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 18.69 | 21.04 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 19.05 | 20.97 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 19.05 | 20.92 |
| Zm00001d003333_P005 | Maize | nucleus | 18.62 | 20.9 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 18.26 | 20.6 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 18.62 | 19.8 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 17.47 | 18.46 |
Protein Annotations
| EntrezGene:100263414 | wikigene:100263414 | MapMan:35.2 | EMBL:AM424082 | ProteinID:CAN71153 | ProteinID:CAN71153.1 |
| ProteinID:CCB62066 | ProteinID:CCB62066.1 | UniProt:F6I4X1 | EMBL:FN596747 | EntrezGene:LOC100263414 | wikigene:LOC100263414 |
| PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | UniParc:UPI000210AB0A | ArrayExpress:VIT_19s0015g01810 | EnsemblPlantsGene:VIT_19s0015g01810 | EnsemblPlants:VIT_19s0015g01810.t01 |
| unigene:Vvi.15823 | RefSeq:XP_002265221 | RefSeq:XP_002265221.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr19:-:10534475..10540995
Molecular Weight (calculated)
151994.0 Da
IEP (calculated)
6.488
GRAVY (calculated)
-0.671
Length
1391 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSVENPPPD PPCPCEISQL KGSDERASDK LALPEVDLFN SGLDDTQLPK FSIRDYVFGT RGKDIKKNWP FSQKNLQLCL KHGVKDVLPP FQSLDSVREG
0101: SFKGCVAETC LPDKENICNL DSFRNLNGEP SGWVPSSSDS AQPNLRIAAD CIDINSSGSG GEKDFPSSTT SNSQSDIGSV HTHRLSSSAV ETDTLLEASA
0201: ELEAAGDLAP HKTESKTQPS AKKCRLIVKL RAVSDPSSTE DIASNCTTLS EAMASKICPV CKTFSSSSNT TLNAHIDQCL SVESTSRWME DSRQTRHRIK
0301: PRKTRLMVDI CATAPRCTLE ELDRRNGSNW ATDLSLPTQN TEGCAHEKRQ RLSPVHPEET GDEGAVYIDA SGTKVRILSK LNVPSSVSKV GEDPRTSKPL
0401: RGSKGSKFFS TNKRKRHVNK YHNYLKVAIQ SKKDCSPKAH NSEIHGTREE NCGAEVHEEE EHRAHNFKAQ EQIKPSDSGT LRQWVCSKRT GLSKKVNGKD
0501: GHQRPAYKLR TTQDLAIESD QSCLGDSYVE KNTRRSPNLM ENVISSESKK KVENSLNESR GYDDGEQSPG RKRLGSSLFR ARISDNVERF QEPLKQNANQ
0601: LSKENTSVCD RIMLKRTNTI GNHVSPLSNK TSDILAGPVR SPDSSTSANP KPYRSKSLSS KAMKSSTLRK DVLSVHQSFL NKKYSALKKP WVLHSEAEID
0701: EESPSEGDQH YDMMHDHVEN QSGVEEINDS VCLDRSSVLE IRQERGAMGV SQGEDAMVLK RSQASWSHGH DVGENIDSSV RVSDDMTDKC DGLESARKLV
0801: QMHAADIVIE SSKMCPDRNI TTLNKSLGPK FNKLANPPEN GSSSLQPMEE YKGPLCEDEA SCRLTDPSLG DEQGMFCLDE VGNGIIGQNS FLGAAMESKI
0901: GQGNSFPEVD PIPIPGPPGS FLPSPRDMGS EDFQGHSSLT TSLVQSSSQD QHDLVDGDSS DSPISATSTI SNSTVARPDL KCSEQLLSVR AHSVQERIRS
1001: DFSATSIWPV LENDLMVPEK VSVGAERILL DGGNLKFKVT SSIKGPLSFQ DDDQPCCCSR KERTSQGVAL NYQESQLLRR RTMASVMLPA IGKQTGCNMN
1101: TRPNNLNVSP EMISISNCPS SGSEKVVFPV MKASTDTIPI NGSTDAALKI PSHSDCDSAS PSGSNPILRL MGKNLMVVNK DEVAPMQLGE TQPVPLSNCP
1201: NPQFLNFSGV SHGNAQNPDY HYFHHMIPPG SFRYIQDPHN TVGQCSGIRL PNSFEGHCNP KTPQALEGMF PNKHMGGAFA ASLGPHDYKG EYNLVTQQNR
1301: PTTRLGATSV YHMEKATNSP HPQYRNSSSM GSSIKEIIII DDTPESEADS TTDDAKHTKC LRESQLGHGD GDLGGICLVD VILLSCYPGV A
0101: SFKGCVAETC LPDKENICNL DSFRNLNGEP SGWVPSSSDS AQPNLRIAAD CIDINSSGSG GEKDFPSSTT SNSQSDIGSV HTHRLSSSAV ETDTLLEASA
0201: ELEAAGDLAP HKTESKTQPS AKKCRLIVKL RAVSDPSSTE DIASNCTTLS EAMASKICPV CKTFSSSSNT TLNAHIDQCL SVESTSRWME DSRQTRHRIK
0301: PRKTRLMVDI CATAPRCTLE ELDRRNGSNW ATDLSLPTQN TEGCAHEKRQ RLSPVHPEET GDEGAVYIDA SGTKVRILSK LNVPSSVSKV GEDPRTSKPL
0401: RGSKGSKFFS TNKRKRHVNK YHNYLKVAIQ SKKDCSPKAH NSEIHGTREE NCGAEVHEEE EHRAHNFKAQ EQIKPSDSGT LRQWVCSKRT GLSKKVNGKD
0501: GHQRPAYKLR TTQDLAIESD QSCLGDSYVE KNTRRSPNLM ENVISSESKK KVENSLNESR GYDDGEQSPG RKRLGSSLFR ARISDNVERF QEPLKQNANQ
0601: LSKENTSVCD RIMLKRTNTI GNHVSPLSNK TSDILAGPVR SPDSSTSANP KPYRSKSLSS KAMKSSTLRK DVLSVHQSFL NKKYSALKKP WVLHSEAEID
0701: EESPSEGDQH YDMMHDHVEN QSGVEEINDS VCLDRSSVLE IRQERGAMGV SQGEDAMVLK RSQASWSHGH DVGENIDSSV RVSDDMTDKC DGLESARKLV
0801: QMHAADIVIE SSKMCPDRNI TTLNKSLGPK FNKLANPPEN GSSSLQPMEE YKGPLCEDEA SCRLTDPSLG DEQGMFCLDE VGNGIIGQNS FLGAAMESKI
0901: GQGNSFPEVD PIPIPGPPGS FLPSPRDMGS EDFQGHSSLT TSLVQSSSQD QHDLVDGDSS DSPISATSTI SNSTVARPDL KCSEQLLSVR AHSVQERIRS
1001: DFSATSIWPV LENDLMVPEK VSVGAERILL DGGNLKFKVT SSIKGPLSFQ DDDQPCCCSR KERTSQGVAL NYQESQLLRR RTMASVMLPA IGKQTGCNMN
1101: TRPNNLNVSP EMISISNCPS SGSEKVVFPV MKASTDTIPI NGSTDAALKI PSHSDCDSAS PSGSNPILRL MGKNLMVVNK DEVAPMQLGE TQPVPLSNCP
1201: NPQFLNFSGV SHGNAQNPDY HYFHHMIPPG SFRYIQDPHN TVGQCSGIRL PNSFEGHCNP KTPQALEGMF PNKHMGGAFA ASLGPHDYKG EYNLVTQQNR
1301: PTTRLGATSV YHMEKATNSP HPQYRNSSSM GSSIKEIIII DDTPESEADS TTDDAKHTKC LRESQLGHGD GDLGGICLVD VILLSCYPGV A
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEI RGVQRGFSGE GSHMGHHRRI
401: YNQRMLAKRG LVSKKLNEKG HELSEDDEDT WSGGDPTVLR GTDLSATDSY PLKKQKLGSE VAGRKKTLFR SQSAQSRSFR VPQSEKEDES LEGVNINRLK
501: KSVASFQEDK YPPGKKFCSD ASPRGTSMRK FSPPFVPNAW RRLSMPVELK KARLDFSEEK DDEETGKWES EMTHERELRD DDYVSGDDGE NNEVLLRSNP
601: SSSGYDDYND DDEESSEEEG DNNKRAHVLD QTDYTGAEFY QSESDSPTSI EILPSERAMY YSEAGNMIYG QTSCKEDERF DSEVGQGSLF VEVDTIPIPG
701: PPGSFLPSPR DMGFDENLGN SSVITSQVQS SMDQLDRNSS ESPVSAVSNF AAGRLNFPAE LSSFRENFSP DIAMSYSTTP MSFCVPSHHG TITEAEPITI
801: DKTISPSRFR NNDQESCCCQ RKERISEGIT LNHQGSHLLQ RRAASSSNTM NLTNSPTRLD PNHPFEQSPY KTQQALDLQM SKFSSRKSLN AVVPPSPSNP
901: VLRLMGKDLM VMNQGEADEE ASRSSLTPNP QFVDPPCGGT GLYFNTGLYL RNSFDSTHQP QVQAQQQSQA AAFRNNFDHV RYFSPS
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEI RGVQRGFSGE GSHMGHHRRI
401: YNQRMLAKRG LVSKKLNEKG HELSEDDEDT WSGGDPTVLR GTDLSATDSY PLKKQKLGSE VAGRKKTLFR SQSAQSRSFR VPQSEKEDES LEGVNINRLK
501: KSVASFQEDK YPPGKKFCSD ASPRGTSMRK FSPPFVPNAW RRLSMPVELK KARLDFSEEK DDEETGKWES EMTHERELRD DDYVSGDDGE NNEVLLRSNP
601: SSSGYDDYND DDEESSEEEG DNNKRAHVLD QTDYTGAEFY QSESDSPTSI EILPSERAMY YSEAGNMIYG QTSCKEDERF DSEVGQGSLF VEVDTIPIPG
701: PPGSFLPSPR DMGFDENLGN SSVITSQVQS SMDQLDRNSS ESPVSAVSNF AAGRLNFPAE LSSFRENFSP DIAMSYSTTP MSFCVPSHHG TITEAEPITI
801: DKTISPSRFR NNDQESCCCQ RKERISEGIT LNHQGSHLLQ RRAASSSNTM NLTNSPTRLD PNHPFEQSPY KTQQALDLQM SKFSSRKSLN AVVPPSPSNP
901: VLRLMGKDLM VMNQGEADEE ASRSSLTPNP QFVDPPCGGT GLYFNTGLYL RNSFDSTHQP QVQAQQQSQA AAFRNNFDHV RYFSPS
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.