Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06515 | Canola | nucleus, plastid | 57.14 | 62.39 |
| CDY32803 | Canola | nucleus | 59.07 | 61.37 |
| CDY36785 | Canola | nucleus | 35.66 | 60.69 |
| CDY17406 | Canola | nucleus, plastid | 57.24 | 60.56 |
| Bra002832.1-P | Field mustard | nucleus | 59.27 | 60.37 |
| CDY65749 | Canola | nucleus | 53.7 | 60.09 |
| CDY11951 | Canola | nucleus, plastid | 54.31 | 60.09 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 56.94 | 58.66 |
| Bra028942.1-P | Field mustard | nucleus | 55.32 | 56.93 |
| CDY36783 | Canola | cytosol | 6.48 | 53.78 |
| AT5G56250.1 | Thale cress | nucleus | 36.07 | 43.9 |
| Solyc07g066200.2.1 | Tomato | nucleus | 26.75 | 19.7 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 27.46 | 19.48 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 17.83 | 18.92 |
| PGSC0003DMT400056953 | Potato | nucleus | 26.44 | 18.71 |
| Zm00001d003333_P005 | Maize | nucleus | 21.68 | 17.27 |
| OQU81762 | Sorghum | nucleus | 21.38 | 17.07 |
| GSMUA_Achr10P... | Banana | nucleus | 18.74 | 16.86 |
| Os04t0471400-01 | Rice | nucleus | 20.97 | 16.71 |
| Zm00001d025668_P005 | Maize | nucleus | 20.87 | 16.63 |
| GSMUA_Achr10P... | Banana | nucleus | 18.74 | 16.39 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 19.86 | 15.86 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 19.76 | 15.79 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 19.45 | 15.57 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 19.55 | 15.27 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 20.06 | 15.14 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 18.64 | 14.52 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 17.73 | 13.3 |
Protein Annotations
| ArrayExpress:AT5G56240 | EnsemblPlants:AT5G56240.3 | EnsemblPlantsGene:AT5G56240 | EntrezGene:835723 | GO:GO:0008150 | PANTHER:PTHR35767 |
| PANTHER:PTHR35767:SF1 | ProteinID:AED96739.1 | ProteinID:ANM68720.1 | ProteinID:ANM68721.1 | ProteinID:OAO95210.1 | RefSeq:AT5G56240 |
| RefSeq:AT5G56240-TAIR-G | RefSeq:NP_001190554.1 | RefSeq:NP_001330446.1 | RefSeq:NP_001330447.1 | SEG:seg | TAIR:AT5G56240 |
| Unigene:At.7071 | UniParc:UPI00001970F4 | UniProt:A0A178UNZ7 | UniProt:F4K7K8 | MapMan:35.2 | : |
Description
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]
Coordinates
chr5:-:22759663..22764587
Molecular Weight (calculated)
109281.0 Da
IEP (calculated)
7.985
GRAVY (calculated)
-0.811
Length
987 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.