Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P32570_001 | |
| GSMUA_Achr6P24690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | GSMUA_Achr4P32570_001 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | GSMUA_Achr6P24690_001 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 37.74 | 32.0 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 41.29 | 30.31 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 40.65 | 29.91 |
| CDY36785 | Canola | nucleus | 14.19 | 22.76 |
| Os04t0471400-01 | Rice | nucleus | 30.0 | 22.52 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 31.61 | 22.34 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 31.29 | 22.25 |
| GSMUA_Achr10P... | Banana | nucleus | 26.99 | 22.23 |
| CDY06514 | Canola | nucleus, plastid | 16.13 | 21.77 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 16.99 | 21.67 |
| Zm00001d025668_P005 | Maize | nucleus | 28.82 | 21.63 |
| OQU81762 | Sorghum | nucleus | 28.6 | 21.52 |
| CDY20740 | Canola | plastid | 16.88 | 21.24 |
| Zm00001d003333_P005 | Maize | nucleus | 28.06 | 21.07 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 26.99 | 20.32 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 26.99 | 20.31 |
| CDY36786 | Canola | nucleus, plastid | 16.34 | 20.19 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 16.34 | 20.19 |
| AT5G56250.1 | Thale cress | nucleus | 17.53 | 20.1 |
| CDY62101 | Canola | nucleus | 14.62 | 19.88 |
| CDY11950 | Canola | nucleus | 16.24 | 19.87 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 26.24 | 19.79 |
| CDY11951 | Canola | nucleus, plastid | 17.63 | 18.39 |
| CDY06515 | Canola | nucleus, plastid | 17.85 | 18.36 |
| CDY32803 | Canola | nucleus | 18.39 | 18.0 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 18.49 | 17.95 |
| Bra002832.1-P | Field mustard | nucleus | 18.6 | 17.85 |
| CDY32802 | Canola | nucleus | 11.51 | 17.83 |
| Bra002831.1-P | Field mustard | nucleus | 11.51 | 17.83 |
| AT5G56240.3 | Thale cress | nucleus | 18.92 | 17.83 |
| CDY17406 | Canola | nucleus, plastid | 17.85 | 17.79 |
| CDY65749 | Canola | nucleus | 16.24 | 17.12 |
| Solyc07g066200.2.1 | Tomato | nucleus | 24.41 | 16.94 |
| Bra028942.1-P | Field mustard | nucleus | 17.2 | 16.68 |
| PGSC0003DMT400056953 | Potato | nucleus | 24.52 | 16.34 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 24.09 | 16.1 |
| CDY36783 | Canola | cytosol | 0.43 | 3.36 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P04160_001 | EnsemblPlants:GSMUA_Achr5T04160_001 | EnsemblPlantsGene:GSMUA_Achr5G04160_001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | SEG:seg |
| UniParc:UPI0002967BFE | UniProt:M0SVJ5 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G04160_001]
Coordinates
chr5:+:2987530..2995393
Molecular Weight (calculated)
102066.0 Da
IEP (calculated)
8.164
GRAVY (calculated)
-0.626
Length
930 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSTKSPSDP SCSFNLPALT TDESAPQSLA IPEETPTPNF SIRDYVFASR SKSIGTSWPF KQHFLQLCLK HGVKDLLPPF EPPGDDPGIR QDPCSLLENP
101: LPDGNSIACQ GISHDHVDAE IGLITSDDHV NVTSGEIGGL SCSLAVNRGA SEAHSEIDIV EPTKRLESSR EVLGKRCKLV VKLGIISENS RAEDVISNSS
201: TVSDPMASKV CPVCKTFSST SNTTLNAHID QCLSMESNTE LVSSKFLKPK VKPGKKRLMV DIYTTAPHCT LEDLDKRNGT NWAVELAFAT APTAAIDIET
301: KKRKLLPTDS SDDLNEGAVY VDSNGIKLRI LSKPSDTAQP KEELKVRIHE KVTETSKSIF NSKKKHVTAK YSKKMKMKAQ SKKLSSFKLL KKQIRTASKG
401: DHNTETHPDN VESLLHISDP GELTKCSRSA SLRQWICSRR SHVSKKLVRK NVHSTTDAAV PVTRSRLAEC SQLDAGNSFA AISHHLKLSR SSEDLANFQK
501: SNKNNLQFKM VHSMDVGMEK SESSPISSSG WSPNNSVENG RLLRISKSSV NLVATSRRKT NEIHMGIHHQ SDSFSEKTNM TAEICSTSMN VHTVSNLKKN
601: NSLRRSPLNL ESRKVDLSEK LSSCKRFRKH RSIFRSGRSG AEFQSTASGL HGSGVDILGT RESPGSCELD HSKSVTVSRV REMMNSESPS RKDLPESTER
701: DDRSTTEEWK NSTLKKPWPG TECTGPDVQN LDMQVEVLGN ENYVSEPSTR VNSGNPLSND TVTSENLQAA CGSKLEPPPL VEHVQSTSKS EVHVERFVQR
801: SEKQELSFDT MSIQDSSGCL TSHGDMESEI PEKSTSITSV RTIEKGAMNL ASDNEPCGSP VSTASTISLP SPKNSNCLDS VAEPFASAIN AQDKFEMHHH
901: HDHTTCLTSH LHTPKRSIMR AKCTTRSVLT
101: LPDGNSIACQ GISHDHVDAE IGLITSDDHV NVTSGEIGGL SCSLAVNRGA SEAHSEIDIV EPTKRLESSR EVLGKRCKLV VKLGIISENS RAEDVISNSS
201: TVSDPMASKV CPVCKTFSST SNTTLNAHID QCLSMESNTE LVSSKFLKPK VKPGKKRLMV DIYTTAPHCT LEDLDKRNGT NWAVELAFAT APTAAIDIET
301: KKRKLLPTDS SDDLNEGAVY VDSNGIKLRI LSKPSDTAQP KEELKVRIHE KVTETSKSIF NSKKKHVTAK YSKKMKMKAQ SKKLSSFKLL KKQIRTASKG
401: DHNTETHPDN VESLLHISDP GELTKCSRSA SLRQWICSRR SHVSKKLVRK NVHSTTDAAV PVTRSRLAEC SQLDAGNSFA AISHHLKLSR SSEDLANFQK
501: SNKNNLQFKM VHSMDVGMEK SESSPISSSG WSPNNSVENG RLLRISKSSV NLVATSRRKT NEIHMGIHHQ SDSFSEKTNM TAEICSTSMN VHTVSNLKKN
601: NSLRRSPLNL ESRKVDLSEK LSSCKRFRKH RSIFRSGRSG AEFQSTASGL HGSGVDILGT RESPGSCELD HSKSVTVSRV REMMNSESPS RKDLPESTER
701: DDRSTTEEWK NSTLKKPWPG TECTGPDVQN LDMQVEVLGN ENYVSEPSTR VNSGNPLSND TVTSENLQAA CGSKLEPPPL VEHVQSTSKS EVHVERFVQR
801: SEKQELSFDT MSIQDSSGCL TSHGDMESEI PEKSTSITSV RTIEKGAMNL ASDNEPCGSP VSTASTISLP SPKNSNCLDS VAEPFASAIN AQDKFEMHHH
901: HDHTTCLTSH LHTPKRSIMR AKCTTRSVLT
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.