Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | CDY16531 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY20854 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY32837 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY61552 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36786 | Canola | nucleus, plastid | 83.42 | 84.2 |
| AT5G56250.1 | Thale cress | nucleus | 61.71 | 57.83 |
| CDY20740 | Canola | plastid | 55.39 | 56.97 |
| CDY06514 | Canola | nucleus, plastid | 51.32 | 56.6 |
| CDY62101 | Canola | nucleus | 45.13 | 50.15 |
| CDY32802 | Canola | nucleus | 37.24 | 47.17 |
| CDY36785 | Canola | nucleus | 24.74 | 32.41 |
| CDY06515 | Canola | nucleus, plastid | 38.16 | 32.08 |
| CDY11951 | Canola | nucleus, plastid | 36.71 | 31.28 |
| CDY17406 | Canola | nucleus, plastid | 38.03 | 30.98 |
| CDY32803 | Canola | nucleus | 38.68 | 30.95 |
| CDY65749 | Canola | nucleus | 33.95 | 29.25 |
| CDY36783 | Canola | cytosol | 4.34 | 27.73 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 19.87 | 16.24 |
| Solyc07g066200.2.1 | Tomato | nucleus | 27.37 | 15.52 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 27.5 | 15.03 |
| Zm00001d003333_P005 | Maize | nucleus | 24.21 | 14.85 |
| PGSC0003DMT400056953 | Potato | nucleus | 26.97 | 14.7 |
| Os04t0471400-01 | Rice | nucleus | 23.95 | 14.69 |
| OQU81762 | Sorghum | nucleus | 23.68 | 14.56 |
| Zm00001d025668_P005 | Maize | nucleus | 23.68 | 14.53 |
| GSMUA_Achr10P... | Banana | nucleus | 20.39 | 14.13 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 22.76 | 14.0 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 22.63 | 13.95 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 22.63 | 13.93 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 22.89 | 13.77 |
| GSMUA_Achr10P... | Banana | nucleus | 20.13 | 13.55 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 21.58 | 12.94 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 21.58 | 12.54 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 20.39 | 11.78 |
Protein Annotations
| EnsemblPlants:CDY11950 | EnsemblPlantsGene:GSBRNA2T00060798001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | ProteinID:CDY11950 | ProteinID:CDY11950.1 |
| SEG:seg | UniParc:UPI0004EEFF74 | UniProt:A0A078FC14 | MapMan:35.2 | : | : |
Description
BnaC03g13760DBnaC03g13760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FC14]
Coordinates
chrLK032015:+:582428..585447
Molecular Weight (calculated)
83972.5 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.858
Length
760 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNSREVNSN SGRIKCSSYP SLSTDEGPPN NPSSSSHFLH LSKPSDELGQ SHLSTFSIRG YAFSNRTKNI QKSWPFSSTS LQLCLKHGLS DPLPPIQSLG
101: PMISHPPEAS SSKKPTLTHV EATSCKRKLK RLASNDHASA ETKQGLENGS KSKTQVTILN KTPRKKCGLV VKPGACVEKE DQGCLFSASD QSMALRTCPI
201: CKTFSSASNT TLNAHIDQCL SVDLGEQPVS KPNKPRSKPR LKVKTMVDIY ASAKGCTLED LDRRNGTKWA VISSYSNRVI VCDNNKSEVS NKEKKLDEDG
301: DAGIGPVYID AKGQKLRIIS EVKEKASDPS RAHENFNEKK TLRYKSCKKR LDGNASEDSR RGCSEECRGM ERSETPGTSQ RRRMLRKHSL SRNGNKKGRS
401: MCDQPSENVH SLSEDPLVLR GPSHVSTDLS EAVNSQSCGD SQVSGKSTNF AAPKPVDKGV MKLKKAWRFD VSENEDEDSG RWESEMTQER ELADWDEDEE
501: TDKVFLSLSP STSGEDNDYE SWEETGNNKG DCDMLEKTDD VEVEFESMVL EKSGFETEER GSSFMEVDPI PIPGPPGSFL ESPWDMEADA TAAENHGNFF
601: QVQTSFDQLD LTDRNLSESP VSAVSNFAAP ETQTFSLHNI ITTDKRPSGF SANDQSCCCQ RKENAGEDTT FRQPPPHMIH QDLLSKSVPS NSGPVLRLMG
701: KDLMVMNQRE ETSRGDSSLK PASQFQDVSK TQQVSPHAHH HRPFGGNGLY LDASTSFYIP
101: PMISHPPEAS SSKKPTLTHV EATSCKRKLK RLASNDHASA ETKQGLENGS KSKTQVTILN KTPRKKCGLV VKPGACVEKE DQGCLFSASD QSMALRTCPI
201: CKTFSSASNT TLNAHIDQCL SVDLGEQPVS KPNKPRSKPR LKVKTMVDIY ASAKGCTLED LDRRNGTKWA VISSYSNRVI VCDNNKSEVS NKEKKLDEDG
301: DAGIGPVYID AKGQKLRIIS EVKEKASDPS RAHENFNEKK TLRYKSCKKR LDGNASEDSR RGCSEECRGM ERSETPGTSQ RRRMLRKHSL SRNGNKKGRS
401: MCDQPSENVH SLSEDPLVLR GPSHVSTDLS EAVNSQSCGD SQVSGKSTNF AAPKPVDKGV MKLKKAWRFD VSENEDEDSG RWESEMTQER ELADWDEDEE
501: TDKVFLSLSP STSGEDNDYE SWEETGNNKG DCDMLEKTDD VEVEFESMVL EKSGFETEER GSSFMEVDPI PIPGPPGSFL ESPWDMEADA TAAENHGNFF
601: QVQTSFDQLD LTDRNLSESP VSAVSNFAAP ETQTFSLHNI ITTDKRPSGF SANDQSCCCQ RKENAGEDTT FRQPPPHMIH QDLLSKSVPS NSGPVLRLMG
701: KDLMVMNQRE ETSRGDSSLK PASQFQDVSK TQQVSPHAHH HRPFGGNGLY LDASTSFYIP
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.