Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 3
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | CDY16531 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY20854 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY32837 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | CDY61552 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32802 | Canola | nucleus | 64.18 | 73.17 |
| CDY20740 | Canola | plastid | 56.43 | 52.23 |
| AT5G56250.1 | Thale cress | nucleus | 59.65 | 50.31 |
| CDY06514 | Canola | nucleus, plastid | 47.37 | 47.02 |
| CDY36786 | Canola | nucleus, plastid | 51.02 | 46.35 |
| CDY11950 | Canola | nucleus | 50.15 | 45.13 |
| CDY36785 | Canola | nucleus | 26.32 | 31.03 |
| CDY11951 | Canola | nucleus, plastid | 37.72 | 28.92 |
| CDY06515 | Canola | nucleus, plastid | 37.87 | 28.65 |
| CDY32803 | Canola | nucleus | 37.72 | 27.16 |
| CDY17406 | Canola | nucleus, plastid | 36.4 | 26.69 |
| CDY65749 | Canola | nucleus | 33.77 | 26.19 |
| CDY36783 | Canola | cytosol | 4.09 | 23.53 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 19.88 | 14.62 |
| Zm00001d025668_P005 | Maize | nucleus | 25.0 | 13.8 |
| Zm00001d003333_P005 | Maize | nucleus | 24.71 | 13.64 |
| Solyc07g066200.2.1 | Tomato | nucleus | 26.46 | 13.51 |
| OQU81762 | Sorghum | nucleus | 24.12 | 13.35 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 26.75 | 13.16 |
| GSMUA_Achr10P... | Banana | nucleus | 20.61 | 12.85 |
| PGSC0003DMT400056953 | Potato | nucleus | 26.02 | 12.76 |
| Os04t0471400-01 | Rice | nucleus | 23.1 | 12.75 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 22.95 | 12.42 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 22.37 | 12.38 |
| GSMUA_Achr10P... | Banana | nucleus | 20.18 | 12.22 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 21.93 | 12.15 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 21.78 | 12.08 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 21.64 | 11.68 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 20.91 | 10.87 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 20.47 | 10.7 |
Protein Annotations
| EnsemblPlants:CDY62101 | EnsemblPlantsGene:GSBRNA2T00035953001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | ProteinID:CDY62101 | ProteinID:CDY62101.1 |
| SEG:seg | UniParc:UPI0004EC831D | UniProt:A0A078JA71 | MapMan:35.2 | : | : |
Description
BnaCnng39160DBnaCnng39160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA71]
Coordinates
chrLK034098:-:27411..29939
Molecular Weight (calculated)
75339.2 Da
IEP (calculated)
6.702
GRAVY (calculated)
-0.830
Length
684 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLSSSASTG ESTPKNPSTS SSFLHLTNSS DELGQSHHSS VSIRDYASNY RTENIQKSWP FSSTSFQLCL KHGLTDLLPP MQPLNSVVSH PPEASSSHIA
101: LVEAISCKRK FEKLGSNHAL EATKQGLENG SLASGPKSKI QVANINKSPI RKCGSIVKPG ACVDSESKED QGCLFESTMA LRTCPICKTF SSVSNTTLNA
201: HIDKCVSVDS GQQPNSKPRR KVKRMVDIYA TAKRCTLEDI DQRNGTKWAV VSSYSSNQVV SDNNKPQVCN KRKKRSVLHA KVDEDAATIG PVYIDAKGQK
301: LRIISEFNEK ASEEDVSEKE SSKEGKGNHR GFRERLLGKK YHKHCKGHAS EILECRRGYS EECRVMDSSG PTRRRNVWDQ PSENGHSLSA DPPVSRGPSH
401: ANFDLTKTVS SPLNSHNSWR SCGESQVSGK ITKRERCSMP VDKVKLKKAQ SENEEEGEDS GRWESEMTQE RVLTDYSDSD DNKETDTSTS GGEDDDYESW
501: EETGNNNKGD DNMLDKTNDA DAEFESMIYE RTGCGDTAEQ GGSTFMEVDP IPIPGPPGSF LQSPWDMETD VSEHRGNFSV KSLSESTFGQ AAPHMIQQDL
601: GLLSKSFTAA PSSSTSVLRL MGKDLMVINQ REDTSRGYSC PKLTSQFQDL AKTQHVPPPA HLLPRSYGGN GLYHNTSTNF YNIP
101: LVEAISCKRK FEKLGSNHAL EATKQGLENG SLASGPKSKI QVANINKSPI RKCGSIVKPG ACVDSESKED QGCLFESTMA LRTCPICKTF SSVSNTTLNA
201: HIDKCVSVDS GQQPNSKPRR KVKRMVDIYA TAKRCTLEDI DQRNGTKWAV VSSYSSNQVV SDNNKPQVCN KRKKRSVLHA KVDEDAATIG PVYIDAKGQK
301: LRIISEFNEK ASEEDVSEKE SSKEGKGNHR GFRERLLGKK YHKHCKGHAS EILECRRGYS EECRVMDSSG PTRRRNVWDQ PSENGHSLSA DPPVSRGPSH
401: ANFDLTKTVS SPLNSHNSWR SCGESQVSGK ITKRERCSMP VDKVKLKKAQ SENEEEGEDS GRWESEMTQE RVLTDYSDSD DNKETDTSTS GGEDDDYESW
501: EETGNNNKGD DNMLDKTNDA DAEFESMIYE RTGCGDTAEQ GGSTFMEVDP IPIPGPPGSF LQSPWDMETD VSEHRGNFSV KSLSESTFGQ AAPHMIQQDL
601: GLLSKSFTAA PSSSTSVLRL MGKDLMVINQ REDTSRGYSC PKLTSQFQDL AKTQHVPPPA HLLPRSYGGN GLYHNTSTNF YNIP
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.