Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400066172 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | PGSC0003DMT400066172 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g066200.2.1 | Tomato | nucleus | 87.89 | 91.49 |
| CDY06514 | Canola | nucleus, plastid | 14.55 | 29.46 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 15.05 | 28.81 |
| CDY20740 | Canola | plastid | 14.98 | 28.28 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 28.03 | 28.11 |
| AT5G56250.1 | Thale cress | nucleus | 16.2 | 27.87 |
| CDY36783 | Canola | cytosol | 2.37 | 27.73 |
| CDY17406 | Canola | nucleus, plastid | 18.28 | 27.33 |
| CDY06515 | Canola | nucleus, plastid | 17.63 | 27.21 |
| CDY11950 | Canola | nucleus | 14.7 | 26.97 |
| CDY11951 | Canola | nucleus, plastid | 16.99 | 26.57 |
| CDY36786 | Canola | nucleus, plastid | 14.34 | 26.56 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 14.34 | 26.56 |
| CDY32803 | Canola | nucleus | 18.06 | 26.53 |
| AT5G56240.3 | Thale cress | nucleus | 18.71 | 26.44 |
| CDY62101 | Canola | nucleus | 12.76 | 26.02 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 17.78 | 25.89 |
| CDY36785 | Canola | nucleus | 10.75 | 25.86 |
| Bra002832.1-P | Field mustard | nucleus | 17.85 | 25.7 |
| CDY32802 | Canola | nucleus | 10.9 | 25.33 |
| Bra002831.1-P | Field mustard | nucleus | 10.9 | 25.33 |
| CDY65749 | Canola | nucleus | 15.99 | 25.28 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 16.34 | 24.52 |
| Bra028942.1-P | Field mustard | nucleus | 16.85 | 24.5 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 20.0 | 22.07 |
| GSMUA_Achr10P... | Banana | nucleus | 17.35 | 22.06 |
| Os04t0471400-01 | Rice | nucleus | 19.57 | 22.03 |
| OQU81762 | Sorghum | nucleus | 19.21 | 21.68 |
| Zm00001d025668_P005 | Maize | nucleus | 19.0 | 21.39 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 19.35 | 21.31 |
| Zm00001d003333_P005 | Maize | nucleus | 18.78 | 21.15 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 17.13 | 19.35 |
| GSMUA_Achr10P... | Banana | nucleus | 15.48 | 19.13 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 16.85 | 19.01 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 16.63 | 18.82 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 17.2 | 18.35 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 16.92 | 17.93 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400056953 | EnsemblPlantsGene:PGSC0003DMG400022144 | EntrezGene:102590185 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | PGSC:PGSC0003DMG400022144 |
| RefSeq:XP_006346238.1 | RefSeq:XP_015163629.1 | RefSeq:XP_015163630.1 | SEG:seg | UniParc:UPI000295A61D | UniProt:M1C048 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022144]
Coordinates
chr7:-:56095961..56102855
Molecular Weight (calculated)
151891.0 Da
IEP (calculated)
8.018
GRAVY (calculated)
-0.670
Length
1395 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSIENIPPD PCHISLLKSS SSDERPSSDN KLVDLSNSDL DDNNNNKFSI RDYVFRTRRK DIKTNWPFSQ KNLQLCLRHG AATDLLPPFQ SDKGCAVDNC
0101: STDKDNIVTS EEKHVELDDD PVPTSSSSGR ICMPKLAVDC SNINSSGSDR EKVFCSTITS RSCSEIDSVP TAEIRELRCS GAEAVNLLEP LVKKPPMSNK
0201: SGSTVQQSAK KCRLMVKFGN ATDRNVDEAD TTTNSFMVSE AMASKVCPVC KIFTSSSNTT LNAHIDQCLS GESSTAKWTA NPKVIKHRIK PRKTRLMVDI
0301: YVTAKSCTLE DLDRRNGTNW ASNPTLSVRE ITEVPAVEKL EKPPPVNVEC TANEGAVYID ANGTKLRILS KFNDEQLSSS KPVIDPLQKK MVDGDKRSKF
0401: ILTKKRKKHH NLLKSASHTK KFCLSMPDHC PKTKSGQEST FSPRENVDKV DCLNKHLRSA DQMLSNGLAT IKQWACSKRT GLTRKISDKD NHQLSGADMS
0501: TGVQSDNDVL PQTDSVKKRS CLVKSPRSSV CLPESSQRMG NMLLDQPQEE RSEEPPSLHK KVVDFSSYQS SLPSNKKRSL VLQRSKGKHL KVDGHSVNNR
0601: PKMTIDHALS VKNVRVGRNT DNSEINCEQS TPHPSFSSKA RKLSSLRKNL SSVSEGPARG VKYNLKWKTA SFKKSSWSSS SESEEAEVFQ TEGEKLCLRG
0701: NLSETKIQGS KNCDRVIVKR SEVLSIRKNR EGIMASNVEG TLGLKSSQSA LTHSDNETGS ILAGASDAMG SVKANHQSQS DKTMDPAASE LAGRGDFMSF
0801: SKPMDAGSDE MSGPARSHCE SQLFSEEYKG SFLGTKAATC SQDPILGVEG MIDGDVHDVA ELGSNADGQG NYFLEVDPIP IPGPPGSFLP SPGRMSSEDL
0901: HGSSSLTSSR IQSSADHPEF IDQDSSGSPT SAASTVSNST MARTGSRYSG NLYVSGRDSS EMLKCHTGWE DKRSILSGST VDLLVENSAA LCPTANTGND
1001: KDGLDKFDAN TLFPGKGTFR FTNDKPCCCV RKEGGTSQGF AVNREESQLL QRRAMALSPF PASENQLSRD SLTRSNNIIL KSNSFSLSDS SSGPETNPPT
1101: KSSATGHTQF GVSADSEFKL PTRESESFSP SASNPVLRLM GKDLMVINKD EDSPLKRSSH SNSMNDLANT RTRNEDLNSF HQVDARNRLV PHFPQSGDPV
1201: PHFDVRLLNG FKSQDSYSRP QVQPSPTSPA SFLCNSSGSG LMGAPFGRQD YLGGGNLHTV RNGANETCDM KKFVATPISH WQNATSVGPN AVREIIVIDD
1301: SPENEANSPY TMSSGKMQIS SGYTSRFVDL YENRPRGETG AAQNANLLTQ VNELPAKTWN VNPDGCSLVH PNSFSASSSP AGPFRSSLYY STGFS
0101: STDKDNIVTS EEKHVELDDD PVPTSSSSGR ICMPKLAVDC SNINSSGSDR EKVFCSTITS RSCSEIDSVP TAEIRELRCS GAEAVNLLEP LVKKPPMSNK
0201: SGSTVQQSAK KCRLMVKFGN ATDRNVDEAD TTTNSFMVSE AMASKVCPVC KIFTSSSNTT LNAHIDQCLS GESSTAKWTA NPKVIKHRIK PRKTRLMVDI
0301: YVTAKSCTLE DLDRRNGTNW ASNPTLSVRE ITEVPAVEKL EKPPPVNVEC TANEGAVYID ANGTKLRILS KFNDEQLSSS KPVIDPLQKK MVDGDKRSKF
0401: ILTKKRKKHH NLLKSASHTK KFCLSMPDHC PKTKSGQEST FSPRENVDKV DCLNKHLRSA DQMLSNGLAT IKQWACSKRT GLTRKISDKD NHQLSGADMS
0501: TGVQSDNDVL PQTDSVKKRS CLVKSPRSSV CLPESSQRMG NMLLDQPQEE RSEEPPSLHK KVVDFSSYQS SLPSNKKRSL VLQRSKGKHL KVDGHSVNNR
0601: PKMTIDHALS VKNVRVGRNT DNSEINCEQS TPHPSFSSKA RKLSSLRKNL SSVSEGPARG VKYNLKWKTA SFKKSSWSSS SESEEAEVFQ TEGEKLCLRG
0701: NLSETKIQGS KNCDRVIVKR SEVLSIRKNR EGIMASNVEG TLGLKSSQSA LTHSDNETGS ILAGASDAMG SVKANHQSQS DKTMDPAASE LAGRGDFMSF
0801: SKPMDAGSDE MSGPARSHCE SQLFSEEYKG SFLGTKAATC SQDPILGVEG MIDGDVHDVA ELGSNADGQG NYFLEVDPIP IPGPPGSFLP SPGRMSSEDL
0901: HGSSSLTSSR IQSSADHPEF IDQDSSGSPT SAASTVSNST MARTGSRYSG NLYVSGRDSS EMLKCHTGWE DKRSILSGST VDLLVENSAA LCPTANTGND
1001: KDGLDKFDAN TLFPGKGTFR FTNDKPCCCV RKEGGTSQGF AVNREESQLL QRRAMALSPF PASENQLSRD SLTRSNNIIL KSNSFSLSDS SSGPETNPPT
1101: KSSATGHTQF GVSADSEFKL PTRESESFSP SASNPVLRLM GKDLMVINKD EDSPLKRSSH SNSMNDLANT RTRNEDLNSF HQVDARNRLV PHFPQSGDPV
1201: PHFDVRLLNG FKSQDSYSRP QVQPSPTSPA SFLCNSSGSG LMGAPFGRQD YLGGGNLHTV RNGANETCDM KKFVATPISH WQNATSVGPN AVREIIVIDD
1301: SPENEANSPY TMSSGKMQIS SGYTSRFVDL YENRPRGETG AAQNANLLTQ VNELPAKTWN VNPDGCSLVH PNSFSASSSP AGPFRSSLYY STGFS
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEQ IRGVQRGFSG EGSHMGHHRR
401: IYNQRMLAKR GLVSKKLNEK GHELSEDDED TWSGGDPTVL RGTDLSATDS YPLKKQKLGS EVAGRKKTLF RSQSAQSRSF RVPQSEKEDE SLEGVNINRL
501: KKSVASFQED KYPPGKKFCS DASPRGTSMR KFSPPFVPNA WRRLSMPVEL KKARLDFSEE KDDEETGKWE SEMTHERELR DDDYVSGDDG ENNEVLLRSN
601: PSSSGYDDYN DDDEESSEEE GDNNKRAHVL DQTDYTGAEF YQSESDSPTS IEILPSERAM YYSEAGNMIY GQTSCKEDER FDSEVGQGSL FVEVDTIPIP
701: GPPGSFLPSP RDMGFDENLG NSSVITSQVQ SSMDQLDRNS SESPVSAVSN FAAGRLNFPA ELSSFRENFS PDIAMSYSTT PMSFCVPSHH GTITEAEPIT
801: IDKTISPSRF RNNDQESCCC QRKERISEGI TLNHQGSHLL QRRAASSSNT MNLTNSPTRL DPNHPFEQSP YKTQQALDLQ MSKFSSRKSL NAVVPPSPSN
901: PVLRLMGKDL MVMNQGEADE EASRSSLTPN PQFVDPPCGG TGLYFNTGLY LRNSFDSTHQ PQVQAQQQSQ AAAFRNNFDH VRYFSPS
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.