Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P32570_001 | |
| GSMUA_Achr6P24690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56250.1 | GSMUA_Achr4P32570_001 | AT1G49850.1 | 21798944 |
| AT5G56250.1 | GSMUA_Achr6P24690_001 | AT1G49850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P12690_001 | Banana | nucleus | 31.27 | 32.36 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 30.5 | 31.49 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 22.25 | 31.29 |
| GSMUA_Achr10P... | Banana | nucleus | 26.15 | 31.18 |
| Os04t0471400-01 | Rice | nucleus | 25.99 | 27.44 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 27.29 | 27.13 |
| OQU81762 | Sorghum | nucleus | 25.54 | 27.02 |
| Zm00001d003333_P005 | Maize | nucleus | 25.23 | 26.63 |
| GSMUA_Achr10P... | Banana | nucleus | 22.94 | 26.57 |
| Zm00001d025668_P005 | Maize | nucleus | 24.69 | 26.07 |
| TraesCS2D01G332100.1 | Wheat | nucleus | 23.62 | 25.02 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 23.62 | 25.0 |
| TraesCS2B01G351400.1 | Wheat | nucleus | 23.55 | 24.98 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 13.76 | 24.69 |
| CDY06514 | Canola | nucleus, plastid | 12.84 | 24.38 |
| CDY20740 | Canola | plastid | 13.69 | 24.22 |
| AT5G56250.1 | Thale cress | nucleus | 14.07 | 22.69 |
| CDY11950 | Canola | nucleus | 12.54 | 21.58 |
| CDY36785 | Canola | nucleus | 9.48 | 21.38 |
| CDY36786 | Canola | nucleus, plastid | 12.08 | 20.98 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 12.08 | 20.98 |
| CDY62101 | Canola | nucleus | 10.7 | 20.47 |
| CDY36783 | Canola | cytosol | 1.83 | 20.17 |
| AT5G56240.3 | Thale cress | nucleus | 15.14 | 20.06 |
| CDY06515 | Canola | nucleus, plastid | 13.76 | 19.91 |
| CDY32802 | Canola | nucleus | 9.02 | 19.67 |
| Bra002831.1-P | Field mustard | nucleus | 9.02 | 19.67 |
| CDY11951 | Canola | nucleus, plastid | 13.38 | 19.62 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 14.14 | 19.31 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 19.8 | 18.62 |
| CDY65749 | Canola | nucleus | 12.31 | 18.25 |
| Bra028942.1-P | Field mustard | nucleus | 13.3 | 18.14 |
| Solyc07g066200.2.1 | Tomato | nucleus | 18.04 | 17.61 |
| CDY17406 | Canola | nucleus, plastid | 12.46 | 17.47 |
| Bra002832.1-P | Field mustard | nucleus | 12.77 | 17.23 |
| PGSC0003DMT400056953 | Potato | nucleus | 18.35 | 17.2 |
| CDY32803 | Canola | nucleus | 12.46 | 17.16 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P10940_001 | EnsemblPlants:GSMUA_Achr3T10940_001 | EnsemblPlantsGene:GSMUA_Achr3G10940_001 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | SEG:seg |
| UniParc:UPI000295AE95 | UniProt:M0SDL1 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G10940_001]
Coordinates
chr3:-:8097837..8104220
Molecular Weight (calculated)
143401.0 Da
IEP (calculated)
7.090
GRAVY (calculated)
-0.600
Length
1308 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSIDNPSDP SCSSNLSALN SHEGASEKLD SQEAKTVVLQ DNPTSNFSIR DYVLASRNKG IESSWPFPQQ FLQLCVKHGS KPILPPFEPP HLVRTQCVSK
0101: PAEPQPVACS EPDSILADDV LLEPLLSSEV GNTTVNERTK LDELIHLDAK NTLTVRTHHP TEETTNRISE DTVLVAESGS ASEIPSELCA PEPSQNSDKL
0201: CKPLEKKCRL KIKLGAISKT SQLDNIASYI KVSDPMASKV CPVCKIFSST SNTTLNAHMD QCLFVESNTK NILGELPKFK VKQRKKRLMV DIYTTAPCCT
0301: LEDLDRRNGT NWAVELALLA APTTDVGNGT KRAKLSTMES IDDGNESAVY VDSSGMKVRI LSKFHDAPLE NNLKLRKHAR DVKALKSVLN GKKKNFKSKY
0401: SKSMEVKTQK SKMSFKVSTP EGDHRSADQQ HSETQTYKSY SENQVKNTAA TSRQWVHTIQ PDLEKGLINK GRNISLERTV SVNRTILAEN SQSDPCNSSA
0501: VDCHQNNFSR SSEVDTGSPK MKRIDCLYND FDRMNDVKVK SSEPLASSSR HSSKGTKALL KLSKSVDNCQ SLKTKSVEDD SSVQTKYNKF SNLAMRPLEC
0601: SPSMLNEATV TSKKNILVKR SYFHLEGRRG EAIQRPSMFL KFRKHRSILR TGKRGPSYLP PMNGVHGPTR SFGLNITRKN RTLCTRQSGL SSKFIRSESK
0701: VMNQGSPSQS NIPEYEKQES PDTLEEQKHN RLNVLALRPG CHDPQIEDSD MQIEVPDSEA AEKVVADDFV NADSLTFSTQ SYSCPCADDV QSISGNEVHV
0801: VQHFKQRSDQ QETVCDDVSC NEIDHQDIQI VEAADRGVED SCAVQPTDCQ AEITSVQDSS GCLSTHRDVE LEVPRKSPSV TSFVVTADHD LSGDSGPSGS
0901: PLSTGSTISL TSSEDSRLKD SAEEPSLRAI AVQDRLCLAS QTAGSIRAAE QRMSSGRNEE LKEDLPSKVP GVGQPFCCSC WESISKDSQL SRQNGTSRKS
1001: KASQISNLFI GPSISSSFGT YPNWRTVLPA NPGLESSDLS ISMNNSLDSA AKYPTCIDLG SPSPSPQSQN KSTSNPVLRL MGKNLTVVTS EQLVQPQITA
1101: LDFTPNMNSV SPGFSSTNNL LKKEGSAQHY DQLWFGSPAI GQALSTGDHQ MLPHLSIVEM GGIARSPFYS WTTKTDQQTW QAKPTERPNF SQALMDASIV
1201: TDDPHFGQEN ELKGLVAGTA NSLLLASGPS PSLQRSFSYF SSESQTRNIS GGPGSLFPNC LHQKDDASLL NQRINSEGQG HLLLGPSIFQ SPTSGQMAPT
1301: MYYPPLLR
0101: PAEPQPVACS EPDSILADDV LLEPLLSSEV GNTTVNERTK LDELIHLDAK NTLTVRTHHP TEETTNRISE DTVLVAESGS ASEIPSELCA PEPSQNSDKL
0201: CKPLEKKCRL KIKLGAISKT SQLDNIASYI KVSDPMASKV CPVCKIFSST SNTTLNAHMD QCLFVESNTK NILGELPKFK VKQRKKRLMV DIYTTAPCCT
0301: LEDLDRRNGT NWAVELALLA APTTDVGNGT KRAKLSTMES IDDGNESAVY VDSSGMKVRI LSKFHDAPLE NNLKLRKHAR DVKALKSVLN GKKKNFKSKY
0401: SKSMEVKTQK SKMSFKVSTP EGDHRSADQQ HSETQTYKSY SENQVKNTAA TSRQWVHTIQ PDLEKGLINK GRNISLERTV SVNRTILAEN SQSDPCNSSA
0501: VDCHQNNFSR SSEVDTGSPK MKRIDCLYND FDRMNDVKVK SSEPLASSSR HSSKGTKALL KLSKSVDNCQ SLKTKSVEDD SSVQTKYNKF SNLAMRPLEC
0601: SPSMLNEATV TSKKNILVKR SYFHLEGRRG EAIQRPSMFL KFRKHRSILR TGKRGPSYLP PMNGVHGPTR SFGLNITRKN RTLCTRQSGL SSKFIRSESK
0701: VMNQGSPSQS NIPEYEKQES PDTLEEQKHN RLNVLALRPG CHDPQIEDSD MQIEVPDSEA AEKVVADDFV NADSLTFSTQ SYSCPCADDV QSISGNEVHV
0801: VQHFKQRSDQ QETVCDDVSC NEIDHQDIQI VEAADRGVED SCAVQPTDCQ AEITSVQDSS GCLSTHRDVE LEVPRKSPSV TSFVVTADHD LSGDSGPSGS
0901: PLSTGSTISL TSSEDSRLKD SAEEPSLRAI AVQDRLCLAS QTAGSIRAAE QRMSSGRNEE LKEDLPSKVP GVGQPFCCSC WESISKDSQL SRQNGTSRKS
1001: KASQISNLFI GPSISSSFGT YPNWRTVLPA NPGLESSDLS ISMNNSLDSA AKYPTCIDLG SPSPSPQSQN KSTSNPVLRL MGKNLTVVTS EQLVQPQITA
1101: LDFTPNMNSV SPGFSSTNNL LKKEGSAQHY DQLWFGSPAI GQALSTGDHQ MLPHLSIVEM GGIARSPFYS WTTKTDQQTW QAKPTERPNF SQALMDASIV
1201: TDDPHFGQEN ELKGLVAGTA NSLLLASGPS PSLQRSFSYF SSESQTRNIS GGPGSLFPNC LHQKDDASLL NQRINSEGQG HLLLGPSIFQ SPTSGQMAPT
1301: MYYPPLLR
001: MFLSSTDQRS PSNNNPSSSS SFLHLTNSCD ELGQSHLSTF SIRDYAFSYR TKNIKKSWPF SSTSLQLCLN HGLTDPLPPI QPPEVKKPNI THVEAVSHKR
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
101: KSEKLGSYQI LVETTKQGFE NGLLASGSKS KIQVAMVNKN PRKKCGLIVK PGACVDSGGK EDHSSLFSAS DSMALRTCPI CKTFSSASNT TLNAHIDQCL
201: SVDSGQQPIR KPNRPKTKPR LKVKTMTDIY ASAKEGTLED LDKRNGTKWA MISSYSNRVV SDDKPEVSNK VKKRSVSRAR IDEDAAGIGP VYIDAKGQKL
301: RILSKFNEKA SDPSRREHEE VCEKKSSSEG KGGKSFRKKL WGEKHYKHRK LVPQNRKLTV RKSNASEIPE YRRGYSKEGK DFERSETSGP GQGRIFNQRM
401: LTKRSLSRHG KKNGTDICES ENWNSLSEDP LVLRSPSHVS TDLSETVSSP LNSIGSWRVC GESQVSGKSW ALSRNRSIES DLFVANPLRC LTPVARGVMK
501: FKKARMDFSE NEDEDIGKWE SEMTQERELS DYDGWDDDDG ETDKVALSSN PSFSGEDNDY ESYEETGDNK GGDDMLDKTK DADVEFESMV YEKTGCETAE
601: QESSFMEVDP IPIPGPPGSF LPSPWDMMGT DAVEHHGNSS VITSQVHSSQ DQFDLTDRNS SESPVSAISN FAAPETQTLS LHNIITTDKR PSRFRDNDQS
701: CCCQRKEKAL EDTTFCQPPP PQMIQQDLDF LSKSVPAVPS TPNPVLRLMG KDLMVINQRE EPSHNESSPK PTSQFLDLSK TQQASPSVNL LHPPYSGNGY
801: FDTNTSFYNI P
Arabidopsis Description
HAP8Hapless 8 [Source:UniProtKB/TrEMBL;Acc:Q9FH14]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.