Factsheet for HORVU4Hr1G024360.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	endoplasmic reticulum
MultiLoc:	endoplasmic reticulum
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G048520.1
HORVU2Hr1G077940.1
HORVU3Hr1G018540.1
HORVU4Hr1G002700.4
HORVU5Hr1G049880.1
HORVU5Hr1G053150.1
HORVU5Hr1G067010.2
HORVU6Hr1G050140.1
HORVU6Hr1G057630.1
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	HORVU2Hr1G048520.1	AT1G30860.1	21798944
AT3G06430.1	HORVU5Hr1G049880.1	AT2G23290.1	21798944
AT3G06430.1	HORVU2Hr1G077940.1	AT3G14180.1	21798944
AT3G06430.1	HORVU6Hr1G050140.1	AT3G14180.1	21798944
AT3G06430.1	HORVU3Hr1G018540.1	AT3G22550.1	21798944
AT3G06430.1	HORVU4Hr1G002700.4	AT3G22550.1	21798944
AT3G06430.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT3G06430.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT3G06430.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT3G06430.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT3G06430.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944
AT3G06430.1	HORVU5Hr1G067010.2	AT5G06710.1	21798944
AT3G06430.1	HORVU5Hr1G053150.1	AT5G06780.1	21798944
AT3G06430.1	HORVU6Hr1G057630.1	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	88.58	97.15
TraesCS4A01G178100.5	Wheat	plastid	90.66	96.86
TraesCS4D01G132900.3	Wheat	plastid	90.48	96.67
Os03t0309800-02	Rice	plastid	68.51	79.04
EER97871	Sorghum	plastid	66.78	68.93
Zm00001d018693_P001	Maize	plastid	65.57	66.37
KRH02451	Soybean	plastid	50.87	60.25
CDY24692	Canola	plastid	49.83	60.0
KRH02371	Soybean	plastid	50.52	59.84
VIT_05s0020g00690.t01	Wine grape	plastid	51.21	59.44
GSMUA_Achr11P...	Banana	plastid	55.54	59.12
AT3G06430.1	Thale cress	plastid	49.31	58.64
CDY05264	Canola	plastid	49.65	58.57
Bra020748.1-P	Field mustard	plastid	49.65	58.45
Solyc12g098990.1.1	Tomato	plastid	49.48	57.78
PGSC0003DMT400011734	Potato	plastid	49.31	57.58
Solyc01g057200.2.1	Tomato	plastid	45.85	56.38
PGSC0003DMT400022191	Potato	plastid	48.44	55.89
KRH37687	Soybean	plastid	41.52	49.48
HORVU7Hr1G027800.8	Barley	cytosol	29.41	35.05
HORVU4Hr1G086600.3	Barley	plastid	29.93	34.88
HORVU6Hr1G075250.5	Barley	plastid	17.3	20.0
HORVU0Hr1G007320.4	Barley	cytosol	12.8	16.05
HORVU2Hr1G035060.2	Barley	cytosol	16.61	15.36
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	13.15	14.9
HORVU3Hr1G114340.4	Barley	mitochondrion	16.09	14.67
HORVU2Hr1G043170.1	Barley	mitochondrion	15.57	13.62
HORVU7Hr1G111000.5	Barley	plastid	17.65	12.5
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	13.84	12.4
HORVU5Hr1G114630.1	Barley	mitochondrion	16.44	11.4
HORVU5Hr1G022350.1	Barley	plastid	10.03	11.28
HORVU2Hr1G056820.1	Barley	plastid	15.22	10.74

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287NJS8	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009553
GO:GO:0009555	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009856	GO:GO:0019843
GO:GO:0048868	EnsemblPlantsGene:HORVU4Hr1G024360	EnsemblPlants:HORVU4Hr1G024360.2	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B48552A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:138274794..138278688

Molecular Weight (calculated)

65275.2 Da

IEP (calculated)

8.049

GRAVY (calculated)

-0.424

Length

578 amino acids

Sequence
(BLAST)

001: IEVYHVLVSH ECHLSWSYFF CHWSLLELSS LALSYLLLSA FASELPANST SMALAGAANA TFRPRLVTAA ADTSDTHTRR RHWKAGEFPF PTTSPSSGTQ
101: QRRRPRTTER PPPPPPSKGE DPEGRGRQRH WKAGEDPEGR GRQRHWKAGE FPAAGESQSQ SGRRGRARTP IKNVQKRLDA RADAKAWACT VTEALADRIA
201: AKNWQGALQV FEMLKEQPFY YPKEGTYMKL LLLLGRSGQP SLAQDLFTEM QQQGCQPTPE LYTALIGAYC RNGLLDEALK LLQDMKANPL CQPDVYTYSI
301: LIKAFVDAPR FDLVDAMYKE MAERSVAPNT VTQNIVLSGY CRAGRLDDME KLLSAMLESA NSKPDVWTMN IILSLFGNSG QVELMEKWYE KFRGYGIEPE
401: TRTFNILIGA YGKKRMYDKM SAVMEYMRRL AFPWTTATYN NVIEAFAEAG DAKNMEDTFN QMRSEGMKPD TKTFCCLING FSNAALFHKV VGMVKLAERL
501: DVPPNTSFHN SVLAACAKAE DLMEMERVFR HMKHMQCEPD AITYSILLEA YRKEGMTDKM YALQQENPSL VSTELVMV

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.