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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 4
  • plastid 6
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU2Hr1G069400.8
HORVU2Hr1G076920.3
HORVU3Hr1G038010.1
HORVU3Hr1G073190.1
HORVU3Hr1G079210.4
HORVU3Hr1G079290.1
HORVU4Hr1G013180.1
HORVU4Hr1G026290.3
HORVU4Hr1G069450.3
HORVU4Hr1G075710.1
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G014430.6
HORVU5Hr1G019040.1
HORVU5Hr1G044710.4
HORVU5Hr1G093720.3
HORVU5Hr1G094160.2
HORVU5Hr1G105870.1
HORVU5Hr1G109710.2
HORVU7Hr1G011400.2
HORVU7Hr1G033820.5

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G23290.1 HORVU4Hr1G013180.1 AT1G49850.1 21798944
AT2G23290.1 HORVU4Hr1G069450.3 AT1G49850.1 21798944
AT2G23290.1 HORVU5Hr1G019040.1 AT1G49850.1 21798944
AT2G23290.1 HORVU5Hr1G014430.6 AT2G30580.1 21798944
AT2G23290.1 HORVU5Hr1G093720.3 AT2G30580.1 21798944
AT2G23290.1 HORVU5Hr1G094160.2 AT2G30580.1 21798944
AT2G23290.1 HORVU0Hr1G001280.1 AT2G41090.1 17360592
AT2G23290.1 HORVU2Hr1G016740.4 AT2G41090.1 17360592
AT2G23290.1 HORVU3Hr1G038010.1 AT2G41090.1 17360592
AT2G23290.1 HORVU3Hr1G079210.4 AT2G41090.1 17360592
AT2G23290.1 HORVU4Hr1G026290.3 AT2G41090.1 17360592
AT2G23290.1 HORVU5Hr1G014060.1 AT2G41090.1 17360592
AT2G23290.1 HORVU5Hr1G014070.2 AT2G41090.1 17360592
AT2G23290.1 HORVU5Hr1G044710.4 AT2G41090.1 17360592
AT2G23290.1 HORVU0Hr1G001280.1 AT2G41100.1 17360592
AT2G23290.1 HORVU2Hr1G016740.4 AT2G41100.1 17360592
AT2G23290.1 HORVU3Hr1G038010.1 AT2G41100.1 17360592
AT2G23290.1 HORVU3Hr1G079210.4 AT2G41100.1 17360592
AT2G23290.1 HORVU4Hr1G026290.3 AT2G41100.1 17360592
AT2G23290.1 HORVU5Hr1G014060.1 AT2G41100.1 17360592
AT2G23290.1 HORVU5Hr1G014070.2 AT2G41100.1 17360592
AT2G23290.1 HORVU5Hr1G044710.4 AT2G41100.1 17360592
AT2G23290.1 HORVU4Hr1G075710.1 AT3G09630.1 21798944
AT2G23290.1 HORVU5Hr1G105870.1 AT3G09630.1 21798944
AT2G23290.1 HORVU2Hr1G069400.8 AT3G11590.1 21798944
AT2G23290.1 HORVU3Hr1G079290.1 AT3G60360.1 21798944
AT2G23290.1 HORVU5Hr1G109710.2 AT4G02770.1 21798944
AT2G23290.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT2G23290.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT2G23290.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT2G23290.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT2G23290.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT2G23290.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT2G23290.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT2G23290.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
AT3G50060.1 HORVU2Hr1G076920.3 AT1G59750.1 17675404
AT3G50060.1 HORVU3Hr1G073190.1 AT3G16120.1 21798944
AT3G50060.1 HORVU7Hr1G011400.2 AT3G16120.1 21798944
AT3G50060.1 HORVU7Hr1G033820.5 AT5G20730.1 17675404
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G159600.1 Wheat nucleus 70.75 89.29
TraesCS5B01G157300.1 Wheat nucleus 70.28 88.96
TraesCS5D01G164600.1 Wheat nucleus 70.99 87.76
Os09t0106700-01 Rice nucleus 54.25 72.1
Zm00001d005300_P001 Maize nucleus 46.7 69.47
Zm00001d019712_P001 Maize nucleus 54.48 66.96
EER98550 Sorghum nucleus 57.55 66.67
KRH05621 Soybean nucleus 37.26 58.96
GSMUA_Achr4P20150_001 Banana nucleus 37.03 58.36
KRH61351 Soybean nucleus 33.96 55.6
VIT_07s0129g01050.t01 Wine grape nucleus 40.57 55.13
GSMUA_Achr3P13070_001 Banana nucleus 37.26 54.48
KRH15420 Soybean nucleus 34.67 53.85
KRH57983 Soybean nucleus 37.26 53.56
GSMUA_Achr1P26140_001 Banana nucleus 35.61 53.55
CDY22442 Canola nucleus 34.43 53.09
KRH28419 Soybean nucleus 36.79 52.53
KRH77058 Soybean nucleus 37.26 51.8
VIT_18s0001g09850.t01 Wine grape nucleus 38.21 51.76
CDY38933 Canola nucleus 35.38 51.37
Bra032176.1-P Field mustard nucleus 35.38 51.37
GSMUA_Achr4P09450_001 Banana nucleus 36.56 51.32
PGSC0003DMT400008569 Potato nucleus 38.68 51.25
CDY44045 Canola nucleus 34.2 50.88
GSMUA_Achr1P09750_001 Banana nucleus 35.61 50.84
Solyc04g078420.1.1 Tomato nucleus 39.15 50.61
CDX89554 Canola nucleus 34.91 50.51
GSMUA_Achr4P12950_001 Banana nucleus 31.37 50.0
VIT_03s0180g00210.t01 Wine grape nucleus 35.61 49.84
CDX75635 Canola nucleus 35.14 49.83
GSMUA_Achr8P25220_001 Banana nucleus 34.67 49.66
GSMUA_Achr9P22600_001 Banana nucleus 33.73 49.65
CDY29542 Canola nucleus 30.9 49.43
Bra017813.1-P Field mustard nucleus 30.9 49.43
GSMUA_AchrUn_... Banana nucleus 32.78 49.12
CDX72621 Canola nucleus 30.66 49.06
CDY12830 Canola nucleus 29.25 49.01
Bra012149.1-P Field mustard nucleus 34.2 48.99
CDX69287 Canola nucleus 35.14 48.69
Bra010593.1-P Field mustard nucleus 34.43 47.87
CDY01420 Canola nucleus 29.48 47.53
CDY23023 Canola nucleus 32.31 47.24
GSMUA_Achr3P28230_001 Banana nucleus 32.08 47.22
HORVU6Hr1G035470.1 Barley nucleus 32.78 46.96
AT2G23290.1 Thale cress nucleus 34.2 46.93
AT5G67300.1 Thale cress nucleus 33.49 46.56
Bra012910.1-P Field mustard nucleus 31.84 46.08
CDY02098 Canola nucleus 31.84 46.08
Bra011749.1-P Field mustard nucleus 35.61 46.04
AT4G37260.1 Thale cress nucleus 34.67 45.94
CDY57355 Canola nucleus 29.72 45.32
Solyc02g092930.1.1 Tomato nucleus 38.44 45.15
PGSC0003DMT400064306 Potato mitochondrion, nucleus 39.15 44.74
Bra036048.1-P Field mustard nucleus 28.07 44.74
CDY30608 Canola nucleus 27.83 44.53
AT3G50060.1 Thale cress nucleus 31.37 44.19
HORVU7Hr1G116750.3 Barley nucleus 30.42 43.88
Bra029990.1-P Field mustard nucleus 29.72 42.86
HORVU7Hr1G116760.1 Barley mitochondrion 33.49 39.89
CDX68566 Canola nucleus 27.59 37.26
HORVU4Hr1G077230.1 Barley nucleus 19.81 30.11
HORVU1Hr1G060030.1 Barley nucleus 23.35 29.64
HORVU4Hr1G008640.1 Barley nucleus 14.15 24.69
HORVU3Hr1G038700.2 Barley nucleus 18.16 23.33
HORVU4Hr1G017040.2 Barley nucleus 15.09 23.02
HORVU3Hr1G085570.1 Barley plastid 24.29 22.34
HORVU3Hr1G096010.6 Barley nucleus 16.04 17.8
Protein Annotations
EnsemblPlants:HORVU5Hr1G049880.1EnsemblPlantsGene:HORVU5Hr1G049880Gene3D:1.10.10.60GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/MybPANTHER:PTHR10641
PANTHER:PTHR10641:SF940PFAM:PF00249PFscan:PS51294SEG:segSMART:SM00717SUPFAM:SSF46689
UniParc:UPI000295DD8AUniProt:M0Y130MapMan:15.5.2.1:::
Description
No Description!
Coordinates
chrchr5H:-:387032308..387035205
Molecular Weight (calculated)
44707.1 Da
IEP (calculated)
9.864
GRAVY (calculated)
-0.489
Length
424 amino acids
Sequence
(BLAST)
001: MVATPRVPGP AVPTSPPSLP CWAGTRSPSP PVPGIYPPPA PSAPLTPSFL CLLPSSLHFS TAPPPPHYFG NPPPVAGSGY YAHVHPSIDR SIYGRRVMAA
101: CRGGGGGGGK DVDRIKGPWS PEEDDALQRL VGRHGARNWS LISKSIPGRS GKSCRLRWCN QLSPQVEHRP FTPDEDDTIL RAHARFGNKW ATIARLLSGR
201: TDNAIKNHWN STLKRKYSSS SSASASASAS ASPGDDAVDD DRRPLKRTSS DGYPGLCFSP GSPSGSDLSD SSHQSLPSVM PSAASHQPHV YRPVARAGGV
301: VVLPTATPQP SPPSPPPPPP PPPPATSLSL SLSLPGLDAP EPAPVAQPMP MPMPPPPVPA PVQPAAAPQM PPPSMPFHLQ PPPPPQPRAA APFNGEFLSM
401: MQEMIRIEVR NYMSGFHPRS PTSA
Best Arabidopsis Sequence Match ( AT2G23290.1 )
(BLAST)
001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
Arabidopsis Description
AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.