Factsheet for HORVU5Hr1G093720.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU2Hr1G048520.1
HORVU2Hr1G069400.8
HORVU2Hr1G072420.11
HORVU5Hr1G057510.3
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT1G06770.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT1G06770.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202
AT2G30580.1	HORVU2Hr1G048520.1	AT1G30860.1	21798944
AT2G30580.1	HORVU5Hr1G057510.3	AT2G46550.1	21798944
AT2G30580.1	HORVU2Hr1G072420.11	AT3G09980.1	21798944
AT2G30580.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT2G30580.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT2G30580.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202
AT2G30580.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G378600.1	Wheat	nucleus	79.08	81.1
TraesCS5B01G382100.1	Wheat	nucleus	79.65	80.43
TraesCS5D01G388500.1	Wheat	nucleus	77.74	77.88
Zm00001d033322_P001	Maize	nucleus	57.39	56.84
KXG37982	Sorghum	nucleus	55.85	56.4
Os03t0632800-01	Rice	nucleus	46.26	55.79
GSMUA_Achr9P10710_001	Banana	nucleus	38.96	51.01
HORVU5Hr1G014430.6	Barley	nucleus	44.15	48.52
VIT_07s0141g00610.t01	Wine grape	nucleus	39.92	48.37
GSMUA_Achr4P17750_001	Banana	nucleus	36.08	48.33
GSMUA_Achr5P03230_001	Banana	nucleus	39.54	46.82
Solyc06g008600.2.1	Tomato	nucleus	37.24	46.41
Solyc09g065990.2.1	Tomato	nucleus	38.0	46.05
AT2G30580.1	Thale cress	nucleus	37.04	45.95
PGSC0003DMT400038984	Potato	nucleus	37.81	45.81
Solyc06g084040.2.1	Tomato	nucleus	37.62	45.48
CDX97807	Canola	nucleus	36.08	45.19
KRH34095	Soybean	nucleus	37.43	45.14
KRG95629	Soybean	nucleus	36.85	44.86
KRG92687	Soybean	nucleus	37.04	44.57
CDY29659	Canola	nucleus	35.89	44.42
CDY47131	Canola	nucleus	35.51	44.36
Bra022807.1-P	Field mustard	cytosol	5.95	44.29
VIT_14s0081g00070.t01	Wine grape	nucleus	38.0	44.1
KRH67309	Soybean	nucleus	37.62	44.04
CDY10748	Canola	nucleus	35.51	43.94
AT1G06770.1	Thale cress	nucleus	35.12	43.47
Bra018304.1-P	Field mustard	nucleus	35.7	43.06
PGSC0003DMT400051660	Potato	nucleus	37.24	42.92
KRH32110	Soybean	nucleus	34.93	42.42
CDY23989	Canola	nucleus	34.17	41.49
Bra021651.1-P	Field mustard	nucleus	28.02	41.48
KRH71326	Soybean	mitochondrion, nucleus	33.97	41.07
PGSC0003DMT400013629	Potato	nucleus	22.65	40.27
VIT_05s0020g04730.t01	Wine grape	nucleus	35.89	39.45
HORVU5Hr1G106470.4	Barley	nucleus	30.33	37.26
Bra015526.1-P	Field mustard	nucleus	16.7	35.51
CDY06664	Canola	nucleus	25.14	34.2
Bra015525.1-P	Field mustard	cytosol	25.34	31.5
HORVU5Hr1G094160.2	Barley	plastid	25.91	30.47
KRG92425	Soybean	nucleus	24.18	29.58
CDY61240	Canola	nucleus	9.79	28.33
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.06	28.0
KRH34379	Soybean	nucleus	23.22	27.75
PGSC0003DMT400087291	Potato	nucleus	16.51	27.65
Bra001901.1-P	Field mustard	nucleus	21.69	24.41
CDX94870	Canola	nucleus	20.35	23.61
PGSC0003DMT400010761	Potato	nucleus	22.07	23.28
Solyc09g083310.1.1	Tomato	nucleus	17.85	23.25
CDX92974	Canola	cytosol	20.54	23.11
PGSC0003DMT400015657	Potato	nucleus, plastid	17.27	22.78
AT3G23060.1	Thale cress	nucleus	20.73	22.5
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.32	22.1
PGSC0003DMT400087288	Potato	plastid	6.33	19.88

Protein Annotations

EMBL:AK364510	EnsemblPlants:HORVU5Hr1G093720.3	EnsemblPlantsGene:HORVU5Hr1G093720	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	ncoils:Coil	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47
PFAM:PF13923	PFscan:PS50089	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00020066CF	UniProt:F2DKU2	MapMan:12.3.5.1.1.1	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DKU2]

Coordinates

chrchr5H:-:592515438..592521098

Molecular Weight (calculated)

57689.1 Da

IEP (calculated)

8.639

GRAVY (calculated)

-0.941

Length

521 amino acids

Sequence
(BLAST)

001: MQMQPHPDPA SRSRPRPRQE EEEEHTPPPP PEPMPTEEEA VPSPDADEVK DAPAAAEADE EQAEAVDRDK EEEEARDGDE KEAEERRGRG RKRGRRPGAP
101: RGLVMVKREL LARCMTCPLC NRLLRDATTV SECLHTFCRK CIYKKFNDEE VESCPVCNID LGCTPVEKLR ADHSLHDVRS KIFPFKRKKI KAEDVASPDS
201: PPNKRKERSI SSLVVHTPRL TPTGSTGRRT KVVTRKAAAA LHGLAPTVDN PVKKENSDKS AHSSSLPANL GKVPKTKRQI LSNAEEASNC SSNKDTEDDS
301: KDMADNAELW RPLNCLVEAA NRTKSFRSSL QGSGVKREQL NGSPSSTNGN KTNPKEHPKK PKTEDDNKDA PVPAVTLKRK LKGAGRRRSG LRAPADGDPD
401: GALKQNEKRF NCIWFSLVAS LEQKGDSPLP QIPSHYLRIK DANIPASSIQ KYLVQKLSLP SESEVEINCC GQPVNPTQPL RNLVELWLRG RSPQATQAIV
501: GSPAEEFVMV LNYGRPKAME P

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.