Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005852.1-P | |
| Bra009112.1-P | |
| Bra028759.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G06770.1 | Bra005852.1-P | AT5G05410.1 | 18552202 |
| AT1G06770.1 | Bra009112.1-P | AT5G05410.1 | 18552202 |
| AT1G06770.1 | Bra028759.1-P | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06664 | Canola | nucleus | 84.9 | 54.31 |
| Bra015525.1-P | Field mustard | cytosol | 85.31 | 49.88 |
| AT1G06770.1 | Thale cress | nucleus | 48.16 | 28.03 |
| Os03t0741700-00 | Rice | cytosol | 20.0 | 25.52 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 35.51 | 22.36 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 35.92 | 22.11 |
| KRG95629 | Soybean | nucleus | 38.37 | 21.96 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 38.37 | 21.86 |
| Bra018304.1-P | Field mustard | nucleus | 38.37 | 21.76 |
| KRH67309 | Soybean | nucleus | 38.78 | 21.35 |
| Solyc06g084040.2.1 | Tomato | nucleus | 37.14 | 21.11 |
| Solyc06g008600.2.1 | Tomato | nucleus | 35.51 | 20.81 |
| Solyc09g065990.2.1 | Tomato | nucleus | 36.33 | 20.7 |
| PGSC0003DMT400038984 | Potato | nucleus | 36.33 | 20.7 |
| PGSC0003DMT400051660 | Potato | nucleus | 37.96 | 20.58 |
| Bra021651.1-P | Field mustard | nucleus | 29.39 | 20.45 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 35.1 | 19.55 |
| KRH71326 | Soybean | mitochondrion, nucleus | 34.29 | 19.49 |
| Os03t0632800-01 | Rice | nucleus | 34.29 | 19.44 |
| KRH32110 | Soybean | nucleus | 33.88 | 19.35 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 26.12 | 18.6 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 34.69 | 18.01 |
| Zm00001d030985_P001 | Maize | nucleus | 34.69 | 17.86 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 34.29 | 17.8 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 34.29 | 17.72 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 33.88 | 17.58 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 37.14 | 17.5 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 35.92 | 17.32 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 36.33 | 17.25 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 25.71 | 16.8 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 25.71 | 16.8 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 35.51 | 16.7 |
| Zm00001d033967_P001 | Maize | nucleus | 25.71 | 16.49 |
| Zm00001d041405_P001 | Maize | nucleus | 32.24 | 16.26 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 26.53 | 16.25 |
| KXG37982 | Sorghum | nucleus | 33.47 | 15.89 |
| Zm00001d033322_P001 | Maize | nucleus | 32.65 | 15.21 |
| Zm00001d013303_P001 | Maize | nucleus | 23.67 | 14.91 |
| HORVU5Hr1G094160.2 | Barley | plastid | 26.94 | 14.9 |
| OQU79520 | Sorghum | nucleus | 33.06 | 14.67 |
| PGSC0003DMT400013629 | Potato | nucleus | 15.92 | 13.31 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 26.12 | 13.11 |
| Bra001901.1-P | Field mustard | nucleus | 19.18 | 10.15 |
| Bra022807.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
Description
AT1G06770 (E=4e-037) DRIP1 | DRIP1 (DREB2A-INTERACTING PROTEIN 1); protein binding / ubiquitin-protein ligase/ zinc ion binding
Coordinates
chrA10:+:1238514..1240289
Molecular Weight (calculated)
28046.0 Da
IEP (calculated)
9.262
GRAVY (calculated)
-0.967
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MIYFHWSDIP TGDVYHHIVN VKERVYVRKC IYEKITEDEI ECCPVCNIDL GGTPLDKLRP DHNLQDLRAK IFPLKGRKVK APEPARKKER SMSYLVDVTE
101: TKASDQAGRR RTKTVTSKEL LRDSASLAEK EEESLLKGHL LESTSSPNKF TQNKKDSDEP WDPESYWKPL NFLVEVANRT QTLKSSSASQ GPGSKSEQAS
201: SSSHKQIQPR VKDHKSRYKR EYEKSAKQEM GNGPVWFSLM TSSDQ
101: TKASDQAGRR RTKTVTSKEL LRDSASLAEK EEESLLKGHL LESTSSPNKF TQNKKDSDEP WDPESYWKPL NFLVEVANRT QTLKSSSASQ GPGSKSEQAS
201: SSSHKQIQPR VKDHKSRYKR EYEKSAKQEM GNGPVWFSLM TSSDQ
001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M
Arabidopsis Description
DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.