CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	CDX70151	AT5G05410.1	18552202
AT1G06770.1	CDX98843	AT5G05410.1	18552202
AT1G06770.1	CDY04950	AT5G05410.1	18552202
AT1G06770.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015526.1-P	Field mustard	nucleus	54.31	84.9
Bra015525.1-P	Field mustard	cytosol	79.11	72.31
AT1G06770.1	Thale cress	nucleus	46.48	42.28
CDX97807	Canola	nucleus	44.91	41.35
CDY29659	Canola	nucleus	44.65	40.62
CDY23989	Canola	nucleus	44.91	40.09
CDY47131	Canola	nucleus	42.04	38.61
CDY10748	Canola	nucleus	42.3	38.48
KRH67309	Soybean	nucleus	40.21	34.61
VIT_07s0141g00610.t01	Wine grape	nucleus	38.64	34.42
Solyc06g008600.2.1	Tomato	nucleus	37.08	33.97
KRG95629	Soybean	nucleus	37.86	33.88
PGSC0003DMT400038984	Potato	nucleus	37.86	33.72
GSMUA_Achr9P10710_001	Banana	nucleus	34.99	33.67
Solyc09g065990.2.1	Tomato	nucleus	37.34	33.26
Solyc06g084040.2.1	Tomato	nucleus	35.77	31.79
Os03t0741700-00	Rice	cytosol	15.67	31.25
PGSC0003DMT400051660	Potato	nucleus	36.81	31.19
GSMUA_Achr5P03230_001	Banana	nucleus	35.25	30.68
KRH71326	Soybean	mitochondrion, nucleus	34.46	30.63
KRH32110	Soybean	nucleus	33.94	30.3
PGSC0003DMT400013629	Potato	nucleus	22.98	30.03
Os12t0600200-03	Rice	cytosol, nucleus	26.11	29.07
GSMUA_Achr4P17750_001	Banana	nucleus	29.24	28.79
TraesCS5A01G378600.1	Wheat	nucleus	34.73	26.18
TraesCS5B01G382100.1	Wheat	nucleus	35.25	26.16
TraesCS5D01G388500.1	Wheat	nucleus	35.51	26.15
TraesCS5A01G058000.1	Wheat	nucleus	31.59	25.64
Zm00001d030985_P001	Maize	nucleus	31.85	25.63
TraesCS5D01G069800.1	Wheat	nucleus	31.33	25.42
HORVU5Hr1G014430.6	Barley	nucleus	31.33	25.32
HORVU5Hr1G093720.3	Barley	nucleus	34.2	25.14
KXG37982	Sorghum	nucleus	33.42	24.81
TraesCS5B01G065600.1	Wheat	cytosol	30.29	24.58
TraesCS5D01G391100.1	Wheat	mitochondrion	24.02	24.53
TraesCS5A01G381800.1	Wheat	mitochondrion	24.02	24.53
Zm00001d041405_P001	Maize	nucleus	30.55	24.07
CDY61240	Canola	nucleus	11.23	23.89
Zm00001d033322_P001	Maize	nucleus	32.38	23.57
TraesCS5B01G385300.1	Wheat	mitochondrion	24.28	23.25
OQU79520	Sorghum	nucleus	30.81	21.38
HORVU5Hr1G094160.2	Barley	plastid	24.02	20.77
Os03t0632800-01	Rice	nucleus	23.24	20.6
KXG37592	Sorghum	mitochondrion, nucleus	25.07	19.67
Zm00001d033967_P001	Maize	nucleus	18.8	18.85
CDX94870	Canola	nucleus	21.67	18.49
Zm00001d013303_P001	Maize	nucleus	18.28	17.99
CDX92974	Canola	cytosol	21.41	17.71

Protein Annotations

MapMan:12.3.5.1.1.1	EnsemblPlants:CDY06664	ProteinID:CDY06664	ProteinID:CDY06664.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009414	GO:GO:0009628	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0051865	EnsemblPlantsGene:GSBRNA2T00122828001	PANTHER:PTHR10825
PANTHER:PTHR10825:SF70	UniParc:UPI0004EEBA83	SEG:seg	:	:	:

Description

BnaA10g04430DE3 ubiquitin protein ligase DRIP1 [Source:Projected from Arabidopsis thaliana (AT1G06770) UniProtKB/Swiss-Prot;Acc:Q9M9Y4]

Coordinates

chrLK031972:-:102240..105608

Molecular Weight (calculated)

43168.6 Da

IEP (calculated)

9.031

GRAVY (calculated)

-0.646

Length

383 amino acids

Sequence
(BLAST)

001: MKSLSCVGRP CDIPGESTSD THAEADRSLR FYLVLEEIVV GGGGSGGIIH FHWSDIPTGD VYHHIVNVKG RVYVRFVKRI CMKSIYEKIT EDEIECCPVC
101: NIDLGGTPLD KLRPDHNLQD LRAKIFPLKG RKVKAPEPAR KKERSMSYLV DVTETKASDQ AGRRRTKTVT SKELLRESAS LAEKEEESLL KGQLLESTSS
201: PNKSTQNKKD SDEPWDPESY WKALNFLVEV ANRTQTLKSS CASQGPGSKS EQASASSHKQ IQPRVKDHKS RYKREYEKSA KREMGNGPVW FSLVASSDQD
301: GDIPVSYIQK YLMRKLNLQS ETEVEIRCMG EAVIPTLKLQ KLVDLWLHRC SKRQKIDALI GSSAKDYMMV LAYGRKLPEC NNT

Best Arabidopsis Sequence Match ( AT1G06770.1 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.