CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90296
KRG96151
KRG97204
KRH06447
KRH12155
KRH15737
KRH25284
KRH30384
KRH33541
KRH37161
KRH47890
KRH53733
KRH64202
KRH67862
KRH68927

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	KRH12155	AT1G30860.1	21798944
AT2G30580.1	KRH37161	AT1G30860.1	21798944
AT2G30580.1	KRH53733	AT2G40620.1	21798944
AT2G30580.1	KRH64202	AT2G40620.1	21798944
AT2G30580.1	KRG97204	AT2G46550.1	21798944
AT2G30580.1	KRH06447	AT2G46550.1	21798944
AT2G30580.1	KRH47890	AT2G46550.1	21798944
AT2G30580.1	KRH68927	AT2G46550.1	21798944
AT2G30580.1	KRG96151	AT3G09980.1	21798944
AT2G30580.1	KRH67862	AT3G09980.1	21798944
AT2G30580.1	KRG90296	AT4G13540.1	21798944
AT2G30580.1	KRH15737	AT4G13540.1	21798944
AT2G30580.1	KRH33541	AT4G13540.1	21798944
AT2G30580.1	KRH25284	AT5G22310.1	21798944
AT2G30580.1	KRH30384	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32110	Soybean	nucleus	94.2	94.64
KRG95629	Soybean	nucleus	61.72	62.15
KRH67309	Soybean	nucleus	62.41	60.45
VIT_07s0141g00610.t01	Wine grape	nucleus	58.24	58.37
PGSC0003DMT400038984	Potato	nucleus	53.83	53.95
Solyc09g065990.2.1	Tomato	nucleus	52.9	53.02
Solyc06g084040.2.1	Tomato	nucleus	52.44	52.44
Solyc06g008600.2.1	Tomato	nucleus	50.12	51.67
AT2G30580.1	Thale cress	nucleus	49.65	50.95
PGSC0003DMT400051660	Potato	nucleus	52.44	50.0
Bra022807.1-P	Field mustard	cytosol	8.12	50.0
CDY47131	Canola	nucleus	48.26	49.88
CDY10748	Canola	nucleus	48.26	49.41
Bra018304.1-P	Field mustard	nucleus	47.8	47.69
CDY29659	Canola	nucleus	46.4	47.51
CDX97807	Canola	nucleus	45.71	47.36
AT1G06770.1	Thale cress	nucleus	46.17	47.27
PGSC0003DMT400013629	Potato	nucleus	31.79	46.76
KRH34095	Soybean	nucleus	46.4	46.3
GSMUA_Achr9P10710_001	Banana	nucleus	42.69	46.23
KRG92687	Soybean	nucleus	46.4	46.19
Os03t0741700-00	Rice	cytosol	20.42	45.83
Bra021651.1-P	Field mustard	nucleus	36.66	44.89
CDY23989	Canola	nucleus	44.55	44.76
GSMUA_Achr5P03230_001	Banana	nucleus	39.91	39.09
GSMUA_Achr4P17750_001	Banana	nucleus	34.8	38.56
KXG37982	Sorghum	nucleus	41.53	34.69
CDY06664	Canola	nucleus	30.63	34.46
TraesCS5A01G378600.1	Wheat	nucleus	40.6	34.45
Os12t0600200-03	Rice	cytosol, nucleus	27.38	34.3
Bra015526.1-P	Field mustard	nucleus	19.49	34.29
Zm00001d030985_P001	Maize	nucleus	37.82	34.24
TraesCS5D01G069800.1	Wheat	nucleus	37.35	34.11
HORVU5Hr1G093720.3	Barley	nucleus	41.07	33.97
TraesCS5A01G058000.1	Wheat	nucleus	37.12	33.9
Zm00001d033322_P001	Maize	nucleus	41.3	33.84
HORVU5Hr1G014430.6	Barley	nucleus	37.12	33.76
TraesCS5D01G391100.1	Wheat	mitochondrion	29.23	33.6
TraesCS5A01G381800.1	Wheat	mitochondrion	29.23	33.6
TraesCS5B01G382100.1	Wheat	nucleus	40.14	33.53
TraesCS5D01G388500.1	Wheat	nucleus	40.37	33.46
Zm00001d041405_P001	Maize	nucleus	37.59	33.33
TraesCS5B01G065600.1	Wheat	cytosol	36.43	33.26
Os03t0632800-01	Rice	nucleus	32.48	32.41
TraesCS5B01G385300.1	Wheat	mitochondrion	29.7	32.0
Zm00001d013303_P001	Maize	nucleus	28.31	31.36
KRG92425	Soybean	nucleus	30.16	30.52
Bra015525.1-P	Field mustard	cytosol	29.23	30.07
HORVU5Hr1G094160.2	Barley	plastid	30.86	30.02
KXG37592	Sorghum	mitochondrion, nucleus	33.41	29.51
KRH34379	Soybean	nucleus	29.47	29.13
Zm00001d033967_P001	Maize	nucleus	25.29	28.53
OQU79520	Sorghum	nucleus	36.43	28.44

Protein Annotations

EntrezGene:100777543	MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	EMBL:ACUP02000887	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G141500
UniProt:I1JF39	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH71326	ProteinID:KRH71326	ProteinID:KRH71326.1
PFAM:PF13923	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR10825	PANTHER:PTHR10825:SF70	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002968110	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:14624985..14630913

Molecular Weight (calculated)

48225.5 Da

IEP (calculated)

10.051

GRAVY (calculated)

-0.527

Length

431 amino acids

Sequence
(BLAST)

001: MMTMKRLVRV KRDAIAACMT CPLCKKFLKE ATAISLCLHT FCRKCIYDKI TDEELENCPV CNIDLGIVPL EKMRPDNILQ DLRNKIFPFK KRKEKAPVSV
101: SSVLLPARRK ERSLSSLVVS TPRVCTQSTM TGRRTKPARK ASGLQGSSLS IEKFIKKEEE LLEDHQDNLC SPDTSNKSAK NGGQSLSPCK NSQSICNREP
201: QNGAEPQEAK WDLWKTLNYL AEAASRSKPF KSNVQASDAK LESMKMTDSD AKVLKAKIKE KKRKAKVEEE KISTDHASSD TSKPNKLRRV RQKKEPVFGE
301: SRISPQAVLD ATDRNLLWND SIWFSLAASE NQEGDAPLPQ IPSNYVRIKN GSIPVSFIQK LLMKKLGLKS EDEVEIKCMG HPVLPSLQVQ NLVDLWGVDT
401: ASLGHRISAT IGSSGKDFVM ILTYGRKVLH P

Best Arabidopsis Sequence Match ( AT2G30580.3 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIR

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.