Factsheet for TraesCS5A01G378600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2
TraesCS2A01G229600.2
TraesCS2A01G282200.1
TraesCS2A01G292600.1
TraesCS2B01G251300.1
TraesCS2B01G299400.1
TraesCS2B01G309000.1
TraesCS2D01G233500.1
TraesCS2D01G281000.1
TraesCS2D01G290400.1
TraesCS3B01G358800.1
TraesCS3D01G322300.1
TraesCS5A01G194900.2
TraesCS5B01G190300.1
TraesCS5D01G198100.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G06770.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G06770.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT2G30580.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS2D01G233500.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS5A01G194900.2	AT2G46550.1	21798944
AT2G30580.1	TraesCS5B01G190300.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS5D01G198100.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS2A01G292600.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2B01G309000.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2D01G290400.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT2G30580.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7D01G134000.1	AT5G22310.1	21798944
AT3G23060.1	TraesCS3B01G358800.1	AT5G45490.1	21798944
AT3G23060.1	TraesCS3D01G322300.1	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G382100.1	Wheat	nucleus	81.1	79.84
HORVU5Hr1G093720.3	Barley	nucleus	81.1	79.08
TraesCS5D01G388500.1	Wheat	nucleus	79.92	78.08
KXG37982	Sorghum	nucleus	56.69	55.81
Zm00001d033322_P001	Maize	nucleus	57.68	55.7
Os03t0632800-01	Rice	nucleus	45.47	53.47
GSMUA_Achr9P10710_001	Banana	nucleus	39.17	50.0
TraesCS5A01G058000.1	Wheat	nucleus	45.28	48.73
GSMUA_Achr4P17750_001	Banana	nucleus	36.42	47.56
VIT_07s0141g00610.t01	Wine grape	nucleus	40.16	47.44
Solyc06g008600.2.1	Tomato	nucleus	37.99	46.17
Bra022807.1-P	Field mustard	cytosol	6.3	45.71
Solyc09g065990.2.1	Tomato	nucleus	38.58	45.58
GSMUA_Achr5P03230_001	Banana	nucleus	39.37	45.45
PGSC0003DMT400038984	Potato	nucleus	38.39	45.35
AT2G30580.1	Thale cress	nucleus	37.4	45.24
KRG95629	Soybean	nucleus	37.99	45.09
Solyc06g084040.2.1	Tomato	nucleus	37.8	44.55
CDX97807	Canola	nucleus	36.42	44.47
KRH67309	Soybean	nucleus	38.58	44.04
CDY47131	Canola	nucleus	36.02	43.88
CDY10748	Canola	nucleus	36.22	43.71
CDY29659	Canola	nucleus	36.22	43.71
VIT_14s0081g00070.t01	Wine grape	nucleus	38.58	43.65
KRH34095	Soybean	nucleus	37.01	43.52
KRG92687	Soybean	nucleus	36.81	43.19
AT1G06770.1	Thale cress	nucleus	35.63	42.99
PGSC0003DMT400051660	Potato	nucleus	37.8	42.48
KRH32110	Soybean	nucleus	35.43	41.96
Bra018304.1-P	Field mustard	nucleus	35.63	41.9
PGSC0003DMT400013629	Potato	nucleus	23.62	40.96
CDY23989	Canola	nucleus	34.45	40.79
KRH71326	Soybean	mitochondrion, nucleus	34.45	40.6
Bra021651.1-P	Field mustard	nucleus	27.76	40.06
VIT_05s0020g04730.t01	Wine grape	nucleus	35.63	38.19
TraesCS5A01G443000.1	Wheat	nucleus	30.12	37.97
Bra015526.1-P	Field mustard	nucleus	17.32	35.92
CDY06664	Canola	nucleus	26.18	34.73
TraesCS5A01G381800.1	Wheat	mitochondrion	25.59	34.67
Bra015525.1-P	Field mustard	cytosol	25.98	31.5
KRG92425	Soybean	nucleus	24.61	29.34
CDY61240	Canola	nucleus	10.24	28.89
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.46	28.67
PGSC0003DMT400087291	Potato	nucleus	17.52	28.62
KRH34379	Soybean	nucleus	23.03	26.83
Bra001901.1-P	Field mustard	nucleus	21.65	23.76
PGSC0003DMT400015657	Potato	nucleus, plastid	18.11	23.29
CDX94870	Canola	nucleus	20.47	23.16
PGSC0003DMT400010761	Potato	nucleus	22.44	23.08
Solyc09g083310.1.1	Tomato	nucleus	18.11	23.0
AT3G23060.1	Thale cress	nucleus	21.26	22.5
CDX92974	Canola	cytosol	20.47	22.46
PGSC0003DMT400087288	Potato	plastid	7.28	22.29
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.61	22.1

Protein Annotations

EnsemblPlants:TraesCS5A01G378600.1	EnsemblPlantsGene:TraesCS5A01G378600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	ncoils:Coil	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	PFAM:PF13923
PFscan:PS50089	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16525
MapMan:12.3.5.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:575687853..575692471

Molecular Weight (calculated)

56309.6 Da

IEP (calculated)

8.699

GRAVY (calculated)

-0.920

Length

508 amino acids

Sequence
(BLAST)

001: MQPHPDPAPP PPPRPRQDDE DDTPPPPPDP MPTEDAEEAK DAPAEVEEAV DREEEEEEAK DGHEQEEGER RGRGRKRGRR PGAPRGLVMV KRELLARCMT
101: CPLCNRLLRD ATTVSECLHT FCRKCIYKKF NDEEVESCPV CDIDLGCTPV EKLRADHSLQ DVRSKIFPFK RKKIKAEDVA SPDSPPNKRK ERSISSLVVH
201: TPRLTPTGST GRRTKVVTRK AAAALHSLGP TVDNPVKKEN SDKSAHSSSL PANLGKVPKT KRQILSNAEE ASNYSSNKDT EDDSKDMADN AELWRPLNCL
301: VEAANRTKSF RSSLQGSGVK REQLNGSPSS TNGIKNPKEH PKRPKTEDDK KDAPVPPVKL KRKFKGAGRR RSGLRAAADG DPDGALMQNE KRFNCIWFSL
401: VASLEQKGDS PLPQIPSHYL RIKDANIPAS SIQKYLVQKL SLPSESEVEI NCCGQPVNPT QPLRNLVELW LRGRSAQATQ AIVGSPAEEF VMVLNYGRPK
501: PMEPLSAQ

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.