Factsheet for Os03t0632800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0798900-00
Os02t0506100-00
Os02t0528100-01
Os03t0107500-00
Os04t0382800-00
Os04t0408600-01
Os07t0499800-01
Os08t0400300-01
Os09t0363500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	Os03t0107500-00	AT1G30860.1	21798944
AT2G30580.1	Os07t0499800-01	AT1G30860.1	21798944
AT2G30580.1	Os08t0400300-01	AT2G46550.1	21798944
AT2G30580.1	Os09t0363500-01	AT2G46550.1	21798944
AT2G30580.1	Os02t0528100-01	AT3G09980.1	21798944
AT2G30580.1	Os04t0408600-01	AT3G09980.1	21798944
AT2G30580.1	Os02t0506100-00	AT5G22310.1	21798944
AT2G30580.1	Os04t0382800-00	AT5G22310.1	21798944
AT3G23060.1	Os01t0798900-00	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G388500.1	Wheat	nucleus	57.18	47.5
HORVU5Hr1G093720.3	Barley	nucleus	55.79	46.26
Zm00001d033322_P001	Maize	nucleus	55.56	45.63
TraesCS5A01G378600.1	Wheat	nucleus	53.47	45.47
KXG37982	Sorghum	nucleus	53.7	44.96
TraesCS5B01G382100.1	Wheat	nucleus	53.01	44.38
Os03t0741700-00	Rice	cytosol	19.21	43.23
GSMUA_Achr4P17750_001	Banana	nucleus	37.73	41.9
GSMUA_Achr9P10710_001	Banana	nucleus	37.5	40.7
VIT_07s0141g00610.t01	Wine grape	nucleus	40.28	40.47
Os12t0600200-03	Rice	cytosol, nucleus	31.71	39.83
Solyc09g065990.2.1	Tomato	nucleus	38.66	38.84
GSMUA_Achr5P03230_001	Banana	nucleus	39.35	38.64
PGSC0003DMT400038984	Potato	nucleus	37.96	38.14
Solyc06g084040.2.1	Tomato	nucleus	37.96	38.05
VIT_14s0081g00070.t01	Wine grape	nucleus	39.35	37.86
KRG92687	Soybean	nucleus	36.57	36.49
KRH34095	Soybean	nucleus	36.34	36.34
Solyc06g008600.2.1	Tomato	nucleus	34.95	36.12
AT2G30580.1	Thale cress	nucleus	34.72	35.71
PGSC0003DMT400051660	Potato	nucleus	37.27	35.62
CDY10748	Canola	nucleus	34.26	35.15
CDY47131	Canola	nucleus	33.56	34.77
AT1G06770.1	Thale cress	nucleus	33.8	34.68
KRG95629	Soybean	nucleus	34.26	34.58
CDX97807	Canola	nucleus	33.1	34.38
Bra015526.1-P	Field mustard	nucleus	19.44	34.29
CDY29659	Canola	nucleus	33.33	34.2
Bra018304.1-P	Field mustard	nucleus	33.8	33.8
KRH67309	Soybean	nucleus	34.26	33.26
KRH32110	Soybean	nucleus	32.87	33.1
KRH71326	Soybean	mitochondrion, nucleus	32.41	32.48
CDY23989	Canola	nucleus	31.48	31.7
Os03t0798200-01	Rice	nucleus	28.01	31.43
VIT_05s0020g04730.t01	Wine grape	nucleus	32.87	29.96
Bra021651.1-P	Field mustard	nucleus	22.92	28.12
PGSC0003DMT400013629	Potato	nucleus	18.06	26.62
CDY06664	Canola	nucleus	20.6	23.24
KRG92425	Soybean	nucleus	21.99	22.3
CDY61240	Canola	nucleus	9.03	21.67
Bra015525.1-P	Field mustard	cytosol	20.83	21.48
KRH34379	Soybean	nucleus	19.91	19.72
Bra001901.1-P	Field mustard	nucleus	18.52	17.28
CDX92974	Canola	cytosol	17.59	16.41
CDX94870	Canola	nucleus	16.9	16.26
PGSC0003DMT400087291	Potato	nucleus	11.34	15.76
AT3G23060.1	Thale cress	nucleus	17.36	15.62
PGSC0003DMT400010761	Potato	nucleus	17.36	15.18
PGSC0003DMT400015657	Potato	nucleus, plastid	10.65	11.65
Solyc09g083310.1.1	Tomato	nucleus	10.19	11.0
PGSC0003DMT400087288	Potato	plastid	3.94	10.24
Solyc09g083300.1.1	Tomato	nucleus, plastid	6.25	10.11
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	2.78	8.0
Bra022807.1-P	Field mustard	cytosol	0.23	1.43

Protein Annotations

MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	UniProt:A0A0P0W0F9	ProteinID:BAS85379.1	InterPro:IPR001841	InterPro:IPR013083
EnsemblPlantsGene:Os03g0632800	EnsemblPlants:Os03t0632800-01	PFAM:PF13923	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR10825
PANTHER:PTHR10825:SF47	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0001C7EF19	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

RING finger proteinSimilar to Zinc finger, C3HC4 type (RING finger) containing protein. (Os03t0632800-01)

Coordinates

chr3:-:24174355..24180456

Molecular Weight (calculated)

47811.1 Da

IEP (calculated)

8.744

GRAVY (calculated)

-0.968

Length

432 amino acids

Sequence
(BLAST)

001: MQPAPASPPK ADGGEDEEEE CSRAVVKEEP HHQQEEDDDD AAAAADGGED EKEKVEEEEV EERGRRRRGR PGRKRGRRSG GGGGSAAAAA AARGGVVMVK
101: RELLARCMTC PLCGRLLRDA TTVSECLHTF CRKCIYEKLN DEEVESCPVC KIDLGCTPVE KLRADHNLQD VRSKIFPFKR KKISADEVAA PVLLPSKRKE
201: RSISSLVVDT PTVTPTGLTG RRTRAVTRKA AALRGLGPGI DDPVKKEIDN GEKHAQNSSL PTNLGKVPQT RRQMSSNAEA SNHSSNKDTE GDRKDLADKT
301: DELWRPLNCL VEAANRTKSS RSSSQSPFVK REQLSDSPGS TSVNKTKSRE YMQKSKIEDD KKDVPLLKRK NQRTGRRREL HAQSDSKPEA AATQNEKKFS
401: SIWFSLVASF EQEGDPPLPQ IPSHYLRINW QI

Best Arabidopsis Sequence Match ( AT2G30580.3 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIR

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.