Factsheet for Solyc09g083310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015657	Potato	nucleus, plastid	44.25	44.81
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	15.5	41.33
Solyc09g083300.1.1	Tomato	nucleus, plastid	20.75	31.09
CDY61240	Canola	nucleus	11.25	25.0
Solyc06g008600.2.1	Tomato	nucleus	23.25	22.25
Os12t0600200-03	Rice	cytosol, nucleus	18.75	21.8
Solyc09g065990.2.1	Tomato	nucleus	22.0	20.47
GSMUA_Achr9P10710_001	Banana	nucleus	20.25	20.35
GSMUA_Achr5P03230_001	Banana	nucleus	22.25	20.23
Solyc06g084040.2.1	Tomato	nucleus	20.0	18.56
TraesCS5A01G378600.1	Wheat	nucleus	23.0	18.11
TraesCS5D01G388500.1	Wheat	nucleus	23.5	18.08
HORVU5Hr1G093720.3	Barley	nucleus	23.25	17.85
TraesCS5B01G382100.1	Wheat	nucleus	23.0	17.83
GSMUA_Achr4P17750_001	Banana	nucleus	16.5	16.97
KRG92425	Soybean	nucleus	18.0	16.9
KXG37982	Sorghum	nucleus	21.25	16.47
VIT_05s0020g04730.t01	Wine grape	nucleus	19.5	16.46
Zm00001d030985_P001	Maize	nucleus	19.25	16.18
Zm00001d033322_P001	Maize	nucleus	21.0	15.97
TraesCS5A01G058000.1	Wheat	nucleus	18.75	15.89
KRH34379	Soybean	nucleus	17.25	15.83
TraesCS5D01G069800.1	Wheat	nucleus	18.5	15.68
TraesCS5B01G065600.1	Wheat	cytosol	18.0	15.25
Zm00001d041405_P001	Maize	nucleus	18.5	15.23
HORVU5Hr1G014430.6	Barley	nucleus	17.75	14.98
TraesCS5D01G391100.1	Wheat	mitochondrion	14.0	14.93
TraesCS5A01G381800.1	Wheat	mitochondrion	13.75	14.67
TraesCS5B01G385300.1	Wheat	mitochondrion	14.5	14.5
HORVU5Hr1G094160.2	Barley	plastid	16.0	14.45
KXG37592	Sorghum	mitochondrion, nucleus	16.25	13.32
OQU79520	Sorghum	nucleus	17.0	12.32
Zm00001d013303_P001	Maize	nucleus	10.75	11.05
Os03t0632800-01	Rice	nucleus	11.0	10.19
Os03t0741700-00	Rice	cytosol	4.5	9.38
Zm00001d033967_P001	Maize	nucleus	7.0	7.33

Protein Annotations

MapMan:35.1	GO:GO:0000245	GO:GO:0000387	GO:GO:0000932	GO:GO:0000956	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005688	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070	GO:GO:0033962	GO:GO:0097526
UniProt:K4CVV7	PANTHER:PTHR10825	PANTHER:PTHR10825:SF70	EnsemblPlantsGene:Solyc09g083310.1	EnsemblPlants:Solyc09g083310.1.1	UniParc:UPI000276C735
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:68984135..68986572

Molecular Weight (calculated)

44107.0 Da

IEP (calculated)

9.852

GRAVY (calculated)

-0.856

Length

400 amino acids

Sequence
(BLAST)

001: MLIDPSPPPA PTPSPVMIAT SSRRKEKLIS SIVNTTQLVD DQVSNQNNVT SSNTGRGRGR GRGRGRGRGR GRGRGRRRES PQNNVNDVNS NNGDTYPRSL
101: IIPLLSSKDT QHKQQVESIA YATESSKKNK SVKPLDEMND LWEPLNNLVT KSEEPVPKFI SNTPIINLED YENEDDNDDD EEDDEYVPSP KVKEQKVRQQ
201: NVVKKLDVVQ ATEAPTSSNN NNNDKGKGKK GRRGRKKKET NSSPLPPPPV SGGGGGNGDG GTNLNVAQVQ VAIETEGGTI SGITRVVNER VHPIWFTLVA
301: CDKQTCPLPL PQISSRYIKI KDVNKPSSYI KKYLAHKLSL QSEDEVEIHM LGMQIQPTFP LKNLAELWLR VAPNSGKHLA KVGASAQEFV MVLNYCRSHP

Best Arabidopsis Sequence Match ( AT1G06770.2 )
(BLAST)

001: MVSAQAGTTR RRTKAPTRKE LRNGSLAERT VKKEESSGDE LLESTSSPDT LNKFTQNKRQ SKKSCKESIS NKENKDGDEP WDSKMDWKPL NFLVEVANGT
101: KPLKSSASQG SGSKSEHANV SRNQFQGSKT KTKNKKRKCK REDDKSNNGD PTTSETVTPK RMRTTQRKRS ATTLGDSRNL PQPDESSAKQ ERRNGPVWFS
201: LVASNDQEGG TSLPQIPANF LRIRDGNTTV SFIQKYLMRK LDLESENEIE IKCMGEAVIP TLTLYNLVDL WLQKSSNHQR FAALVGSSAK DFTMVLVYAR
301: KLPECNM

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.