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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g082100.2.1
Solyc03g083000.2.1
Solyc06g048630.2.1
Solyc06g049040.2.1
Solyc06g074190.2.1
Solyc09g009210.2.1
Solyc09g091060.2.1
Solyc10g005220.2.1
Solyc10g083520.1.1
Solyc11g068720.1.1
Solyc12g097060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G30580.1 Solyc02g082100.2.1 AT1G30860.1 21798944
AT2G30580.1 Solyc10g005220.2.1 AT1G30860.1 21798944
AT2G30580.1 Solyc06g048630.2.1 AT2G40620.1 21798944
AT2G30580.1 Solyc06g049040.2.1 AT2G40620.1 21798944
AT2G30580.1 Solyc03g083000.2.1 AT2G46550.1 21798944
AT2G30580.1 Solyc09g009210.2.1 AT3G09980.1 21798944
AT2G30580.1 Solyc10g083520.1.1 AT3G09980.1 21798944
AT2G30580.1 Solyc09g091060.2.1 AT4G13540.1 21798944
AT2G30580.1 Solyc12g097060.1.1 AT4G13540.1 21798944
AT2G30580.1 Solyc06g074190.2.1 AT5G22310.1 21798944
AT2G30580.1 Solyc11g068720.1.1 AT5G22310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400051660 Potato nucleus 96.52 92.04
Solyc09g065990.2.1 Tomato nucleus 72.62 72.79
VIT_07s0141g00610.t01 Wine grape nucleus 68.68 68.84
Solyc06g008600.2.1 Tomato nucleus 64.73 66.75
KRG95629 Soybean nucleus 58.47 58.88
KRH67309 Soybean nucleus 58.24 56.4
Bra022807.1-P Field mustard cytosol 8.82 54.29
AT2G30580.1 Thale cress nucleus 51.74 53.1
CDY47131 Canola nucleus 51.28 53.0
KRH32110 Soybean nucleus 52.67 52.91
KRH71326 Soybean mitochondrion, nucleus 52.44 52.44
CDY10748 Canola nucleus 50.81 52.02
AT1G06770.1 Thale cress nucleus 49.42 50.59
CDX97807 Canola nucleus 48.26 50.0
CDY29659 Canola nucleus 48.72 49.88
Bra018304.1-P Field mustard nucleus 49.88 49.77
GSMUA_Achr9P10710_001 Banana nucleus 45.24 48.99
CDY23989 Canola nucleus 46.87 47.09
Os03t0741700-00 Rice cytosol 20.42 45.83
Bra021651.1-P Field mustard nucleus 37.35 45.74
GSMUA_Achr5P03230_001 Banana nucleus 45.71 44.77
GSMUA_Achr4P17750_001 Banana nucleus 40.14 44.47
Os12t0600200-03 Rice cytosol, nucleus 30.63 38.37
Os03t0632800-01 Rice nucleus 38.05 37.96
TraesCS5A01G378600.1 Wheat nucleus 44.55 37.8
TraesCS5D01G388500.1 Wheat nucleus 45.48 37.69
HORVU5Hr1G093720.3 Barley nucleus 45.48 37.62
TraesCS5B01G382100.1 Wheat nucleus 45.01 37.6
TraesCS5D01G069800.1 Wheat nucleus 41.07 37.5
TraesCS5A01G058000.1 Wheat nucleus 40.84 37.29
Bra015526.1-P Field mustard nucleus 21.11 37.14
HORVU5Hr1G014430.6 Barley nucleus 40.37 36.71
TraesCS5B01G065600.1 Wheat cytosol 40.14 36.65
KXG37982 Sorghum nucleus 42.92 35.85
Zm00001d041405_P001 Maize nucleus 40.37 35.8
CDY06664 Canola nucleus 31.79 35.77
Zm00001d033322_P001 Maize nucleus 43.62 35.74
Zm00001d030985_P001 Maize nucleus 39.21 35.5
TraesCS5A01G381800.1 Wheat mitochondrion 29.23 33.6
TraesCS5D01G391100.1 Wheat mitochondrion 29.23 33.6
TraesCS5B01G385300.1 Wheat mitochondrion 30.86 33.25
Bra015525.1-P Field mustard cytosol 30.39 31.26
Solyc01g020110.1.1 Tomato endoplasmic reticulum 10.67 30.67
OQU79520 Sorghum nucleus 38.98 30.43
KXG37592 Sorghum mitochondrion, nucleus 33.64 29.71
Zm00001d013303_P001 Maize nucleus 26.68 29.56
Zm00001d033967_P001 Maize nucleus 25.99 29.32
HORVU5Hr1G094160.2 Barley plastid 29.7 28.89
Solyc09g083300.1.1 Tomato nucleus, plastid 13.69 22.1
Solyc09g083310.1.1 Tomato nucleus 18.56 20.0
Protein Annotations
EnsemblPlants:Solyc06g084040.2.1EnsemblPlantsGene:Solyc06g084040.2Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSPANTHER:PTHR10825PANTHER:PTHR10825:SF42PFAM:PF13923PFscan:PS50089
ScanProsite:PS00518SMART:SM00184SUPFAM:SSF57850UniParc:UPI000276B7D3UniProt:K4CAQ9MapMan:12.3.5.1.1.1
Description
No Description!
Coordinates
chr6:-:49298705..49304967
Molecular Weight (calculated)
47986.4 Da
IEP (calculated)
9.572
GRAVY (calculated)
-0.573
Length
431 amino acids
Sequence
(BLAST)
001: MPNQVVKVKR ERIAACITCP LCHKLFRDAT TISECLHTFC RKCIYKKLSD EETECCPICN IDLGCVPLEK LRPDHNLQDI RAKIFPYKRQ KVQAPEVVPS
101: VTPPIRRKER SLSSLVVSTP RVSTQTGTTG RRSKSVARKA LRGSTFSVEK PVRKEGSSGE DQLDSASSPE TLNKFTQNIR QNSSSAELFG QPTPDNETEN
201: GMNLWEGKAD LWKPLNCLVE AANRSKSAKF PSPGSTAKSE YLHSLDNEAH VRKTKVKKHG LETKVQDNKN NSGPAHLGSD KPKKMRRNSQ KKASESGGFS
301: ISPQTVLDAI ATKFERRNNS IWFSLVASED QEGDAPLPQI SAGYLRIKDG NVPVYYIQKY LMKKLDLISE DEVEIRCMGQ LIAPSLQVNT LVDMWLETTT
401: PESVPVITGS SAKEFVMVLS YARKVPIHPA S
Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.