Factsheet for Solyc06g048630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070968	Potato	nucleus	98.57	98.57
Solyc06g049040.2.1	Tomato	nucleus	75.64	79.76
VIT_13s0067g02900.t01	Wine grape	nucleus	71.35	69.36
Bra016980.1-P	Field mustard	nucleus	57.31	58.48
CDX93167	Canola	nucleus	56.73	57.73
CDY06974	Canola	nucleus	57.88	57.39
Bra004582.1-P	Field mustard	nucleus	57.31	56.18
CDX79976	Canola	nucleus	57.31	56.18
CDY23889	Canola	nucleus	57.02	56.06
AT2G40620.1	Thale cress	nucleus	58.74	55.86
KRH64202	Soybean	nucleus	43.27	51.01
KRH53733	Soybean	nucleus	25.5	50.57
Solyc06g060490.2.1	Tomato	nucleus	32.95	41.52
Solyc04g071160.2.1	Tomato	nucleus	36.68	37.54
Solyc06g053350.2.1	Tomato	plastid	38.4	30.88
Solyc04g081190.2.1	Tomato	nucleus	37.25	29.28
Solyc01g110480.2.1	Tomato	nucleus	41.26	24.74
Solyc12g010800.1.1	Tomato	nucleus	20.92	23.86
Solyc07g062710.2.1	Tomato	nucleus, plastid	20.06	23.18
Solyc07g053450.2.1	Tomato	nucleus	18.62	22.89
Solyc11g020950.1.1	Tomato	nucleus	16.33	17.48
Solyc11g006490.1.1	Tomato	nucleus	13.18	14.98
Solyc10g044830.1.1	Tomato	nucleus	7.74	10.93

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:K4C5B0	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF103
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc06g048630.2	EnsemblPlants:Solyc06g048630.2.1	UniParc:UPI0002766559	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:31411478..31417635

Molecular Weight (calculated)

38646.9 Da

IEP (calculated)

6.294

GRAVY (calculated)

-0.750

Length

349 amino acids

Sequence
(BLAST)

001: MQDPSNPNSK QLNQTPPFSA TFRPSHHRRA HSEVNFRLPE DLDLVSDPFD ASAGSFEEIG SEDDFFSTYM DIEKLGSGSN PTDVPGFNNA GAGSSGLVAD
101: CGDGERNFTR PRHRHSNSVD SSSLLLSESI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SASRSKERKA RYITELERKV QTLQTEATTL SAQLTLFQRD
201: TTQFTNENTE LKLRLQAMAQ QAQLRDALNE ALKQEVERLK MATGEMSSSD AYNLGMQHIP YNQSAFFSHQ PQSGASESQN IQMQQFHSLQ DSLLTPHRRL
301: LAGHGQGLPD TMQQDPLGRF QGLDIGGRGL HLVKTETPSI SASESSSTL

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.