Factsheet for Solyc06g049040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042946	Potato	plastid	89.73	91.67
Solyc06g048630.2.1	Tomato	nucleus	79.76	75.64
VIT_13s0067g02900.t01	Wine grape	nucleus	71.6	66.02
CDX93167	Canola	nucleus	57.7	55.69
Bra016980.1-P	Field mustard	nucleus	57.4	55.56
CDY06974	Canola	nucleus	58.61	55.11
Bra004582.1-P	Field mustard	nucleus	58.31	54.21
CDX79976	Canola	nucleus	58.31	54.21
CDY23889	Canola	nucleus	58.01	54.08
AT2G40620.1	Thale cress	nucleus	58.61	52.86
KRH53733	Soybean	nucleus	25.98	48.86
KRH64202	Soybean	nucleus	42.3	47.3
Solyc06g060490.2.1	Tomato	nucleus	34.14	40.79
Solyc04g071160.2.1	Tomato	nucleus	38.07	36.95
Solyc06g053350.2.1	Tomato	plastid	41.39	31.57
Solyc04g081190.2.1	Tomato	nucleus	39.27	29.28
Solyc01g110480.2.1	Tomato	nucleus	42.9	24.4
Solyc12g010800.1.1	Tomato	nucleus	21.75	23.53
Solyc07g053450.2.1	Tomato	nucleus	19.64	22.89
Solyc07g062710.2.1	Tomato	nucleus, plastid	20.54	22.52
Solyc11g020950.1.1	Tomato	nucleus	17.52	17.79
Solyc11g006490.1.1	Tomato	nucleus	13.6	14.66
Solyc10g044830.1.1	Tomato	nucleus	7.85	10.53

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:K4C5F0	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF103
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc06g049040.2	EnsemblPlants:Solyc06g049040.2.1	UniParc:UPI0002766923	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:32316355..32320296

Molecular Weight (calculated)

36707.8 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.686

Length

331 amino acids

Sequence
(BLAST)

001: MQDPSNPNSI KLPTTTFSAA FRPSHHRRAH SEVNFRLPED LDLVSDPFDA PAGSFEEIGS EDDFFSTYMD IEKLASGSNL TDIDAAAARV GVESSDGEKK
101: PRHRHSNSVD SSSLLMTESI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SAARSKERKT RYISELERKV QTLQAEATTL STQLTLFQNT ELKLRLQAME
201: QQAQLRDALN EALKQEVERL KIATGQISAS SDAYSSGMQQ IQYNRPAFFP HQTQPGPSES HNIQMSQFHH LQDSMSNPRH PLLSGNVQAL ADAMQQDPVG
301: RFQGLDISSR GSHLVKSEAP SISASESSTT F

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.