Factsheet for Solyc04g081190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009538	Potato	nucleus	95.72	95.72
HORVU3Hr1G109890.1	Barley	cytosol	8.56	61.29
VIT_18s0001g13740.t01	Wine grape	nucleus	17.79	59.85
TraesCS5A01G491600.1	Wheat	nucleus	27.03	46.88
TraesCS4D01G316900.1	Wheat	nucleus	26.8	45.95
GSMUA_Achr5P20200_001	Banana	nucleus	28.6	45.68
Zm00001d048455_P001	Maize	nucleus	31.76	41.84
CDY12108	Canola	nucleus	38.74	40.38
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	38.29	40.09
KRH61066	Soybean	nucleus, plastid	46.17	39.96
OQU92255	Sorghum	nucleus	27.25	39.67
CDY15909	Canola	plastid	39.64	39.64
TraesCS7A01G268700.1	Wheat	nucleus	41.44	39.4
TraesCS7D01G269300.1	Wheat	nucleus	41.89	39.32
Solyc06g049040.2.1	Tomato	nucleus	29.28	39.27
KRH05913	Soybean	nucleus	48.87	39.24
Solyc01g110480.2.1	Tomato	nucleus	51.35	39.18
KRH17396	Soybean	nucleus	48.87	38.82
CDX90298	Canola	nucleus	38.29	38.81
Zm00001d031723_P002	Maize	nucleus	40.54	38.71
Zm00001d052725_P001	Maize	nucleus	40.54	38.63
Bra010722.1-P	Field mustard	nucleus	38.51	38.43
GSMUA_Achr3P12290_001	Banana	nucleus	43.24	38.4
CDX72732	Canola	nucleus	38.06	38.32
Os08t0543900-00	Rice	nucleus	39.86	38.15
Bra030314.1-P	Field mustard	plastid	39.41	38.04
GSMUA_Achr8P12090_001	Banana	nucleus	40.32	37.84
TraesCS1D01G191000.1	Wheat	nucleus, plastid	32.88	37.82
TraesCS1B01G193800.1	Wheat	nucleus	32.66	37.37
TraesCS1A01G186000.1	Wheat	plastid	32.88	37.34
Zm00001d027461_P001	Maize	plastid	35.81	37.32
Solyc06g048630.2.1	Tomato	nucleus	29.28	37.25
CDX99610	Canola	nucleus	36.94	37.1
Os03t0127500-00	Rice	nucleus	35.59	37.09
CDY22407	Canola	nucleus	36.94	36.85
Solyc06g060490.2.1	Tomato	nucleus	22.97	36.82
EES15257	Sorghum	nucleus	40.77	36.79
Bra033582.1-P	Field mustard	nucleus	36.94	36.77
Os10t0531900-01	Rice	nucleus	32.88	36.5
KXG40277	Sorghum	nucleus	35.14	36.19
KRH51734	Soybean	nucleus	32.43	35.91
Zm00001d029711_P001	Maize	nucleus	31.76	35.52
AT4G38900.1	Thale cress	nucleus	44.14	35.44
TraesCS4B01G320400.1	Wheat	nucleus	31.76	35.25
AT2G21230.3	Thale cress	nucleus	41.67	35.24
CDX82008	Canola	nucleus	29.28	34.95
Bra031172.1-P	Field mustard	nucleus	29.05	34.31
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	35.81	34.12
Solyc06g053350.2.1	Tomato	plastid	30.86	31.57
Solyc04g071160.2.1	Tomato	nucleus	23.65	30.79
Solyc12g010800.1.1	Tomato	nucleus	17.34	25.16
Solyc07g062710.2.1	Tomato	nucleus, plastid	16.44	24.17
Solyc07g053450.2.1	Tomato	nucleus	15.32	23.94
Solyc11g006490.1.1	Tomato	nucleus	13.06	18.89
Solyc11g020950.1.1	Tomato	nucleus	13.51	18.4
Solyc10g044830.1.1	Tomato	nucleus	7.88	14.17

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ProteinID:CAA05898.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR004827	UniProt:O81998	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690
PANTHER:PTHR13690:SF76	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc04g081190.2	EnsemblPlants:Solyc04g081190.2.1	UniParc:UPI00000A34F5
InterPro:bZIP	SEG:seg	:	:	:	:

Description

Transcription factor VSF-1 [Source:UniProtKB/TrEMBL;Acc:O81998]

Coordinates

chr4:+:65191253..65194728

Molecular Weight (calculated)

48280.9 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.633

Length

444 amino acids

Sequence
(BLAST)

001: MAQSNSKPPM SSQNFGVGAV SHVRSLSQSS IFSNSCLPPL SPFPPSEPGM VSGHSSLKDI SMEEADVNSQ GVGVVSSFTR DGLPPRKGHR RSNSDVPLGF
101: SAMIQSSPQL MPISGQKVLG RAVSLGDSNG KIDERKPKGE VTDELLFSYM NLENIETLNG SGTKDRDKDS IVSGTKVTGS ESSNNEAESV MKGNNVSIQP
201: TNLREGTKRS ADANIAPAAR HFRSLSMDSA IGNFHYGDES PNLPTSLMMR SGQLSPSNSG NESSSKHNLD FGNSEFSEAE MKKIMADERL AEIAVLDPKR
301: AKRILANRLS AARSKERKTR YISELEHKVQ KLQTETTTLS TQVTILQKNF VEISSLNSEL KFRIQAMEQQ AQLRDALHEA LTAEVQRLKL AAGEHREEGR
401: LPNNMTQQTP VKHNIFQMQR QQPSQMQQLS VGKASAASAT PASA

Best Arabidopsis Sequence Match ( AT2G21230.1 )
(BLAST)

001: MGGGGDTTDT NMMQRVNSSS GTSSSSIPKH NLHLNPALIR SHHHFRHPFT GAPPPPIPPI SPYSQIPATL QPRHSRSMSQ PSSFFSFDSL PPLNPSAPSV
101: SVSVEEKTGA GFSPSLPPSP FTMCHSSSSR NAGDGENLPP RKSHRRSNSD VTFGFSSMMS QNQKSPPLSS LERSISGEDT SDWSNLVKKE PREGFYKGRK
201: PEVEAAMDDV FTAYMNLDNI DVLNSFGGED GKNGNENVEE MESSRGSGTK KTNGGSSSDS EGDSSASGNV KVALSSSSSG VKRRAGGDIA PTGRHYRSVS
301: MDSCFMGKLN FGDESSLKLP PSSSAKVSPT NSGEGNSSAY SVEFGNSEFT AAEMKKIAAD EKLAEIVMAD PKRVKRILAN RVSAARSKER KTRYMAELEH
401: KVQTLQTEAT TLSAQLTHLQ RDSMGLTNQN SELKFRLQAM EQQAQLRDAL SEKLNEEVQR LKLVIGEPNR RQSGSSSSES KMSLNPEMFQ QLSISQLQHQ
501: QMQHSNQCST MKAKHTSND

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:B3H7M2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.