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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90298 Canola nucleus 89.44 86.99
Bra010722.1-P Field mustard nucleus 89.2 85.39
CDX72732 Canola nucleus 74.65 72.11
CDY22407 Canola nucleus 74.88 71.69
VIT_18s0001g13740.t01 Wine grape nucleus 18.78 60.61
AT4G38900.1 Thale cress nucleus 78.64 60.58
CDY13830 Canola nucleus, plastid 32.63 45.28
CDY15909 Canola plastid 46.71 44.82
CDX99610 Canola nucleus 45.54 43.89
CDX82008 Canola nucleus 35.45 40.59
CDY48943 Canola nucleus 22.07 39.0
Solyc04g081190.2.1 Tomato nucleus 40.38 38.74
PGSC0003DMT400009538 Potato nucleus 40.38 38.74
CDY35020 Canola nucleus 15.49 37.5
KRH61066 Soybean nucleus, plastid 43.9 36.45
KRH05913 Soybean nucleus 45.07 34.72
CDX93167 Canola nucleus 27.46 34.11
CDY06974 Canola nucleus 27.7 33.52
CDX86512 Canola nucleus 24.88 33.33
KRH17396 Soybean nucleus 43.66 33.27
CDY15590 Canola nucleus 24.88 33.02
CDY23889 Canola nucleus 27.46 32.96
CDY19094 Canola nucleus 24.41 32.7
CDY06231 Canola nucleus 24.65 32.31
CDX79976 Canola nucleus 27.0 32.3
CDX80722 Canola nucleus 24.41 32.3
CDY09952 Canola nucleus 24.41 31.71
CDY30752 Canola nucleus 24.41 31.52
CDY15560 Canola nucleus 28.17 31.5
KRH51734 Soybean nucleus 29.11 30.92
CDX86537 Canola nucleus 28.4 30.79
CDY24896 Canola nucleus 24.18 30.38
CDY15381 Canola nucleus 26.06 30.0
CDY10170 Canola nucleus 27.46 29.77
CDY47713 Canola nucleus 27.23 29.59
CDY10799 Canola nucleus 25.59 29.38
CDY71925 Canola nucleus 17.37 29.13
CDY56611 Canola nucleus 25.12 29.08
CDY07597 Canola nucleus 21.36 27.25
CDY64520 Canola nucleus, plastid 15.02 23.44
CDX71000 Canola nucleus, plastid 15.26 23.3
CDX79872 Canola nucleus, plastid 15.26 23.21
CDX71974 Canola nucleus, plastid 14.32 22.85
CDY06053 Canola nucleus 15.02 22.54
CDY22561 Canola nucleus, plastid 14.08 22.39
CDX82009 Canola plastid 19.48 21.67
CDY35379 Canola nucleus, plastid 13.62 21.64
CDX98266 Canola nucleus, plastid 15.02 21.48
CDY13828 Canola plastid 19.48 21.45
CDY70502 Canola nucleus 19.25 21.24
CDY56238 Canola extracellular 6.57 20.9
CDY13829 Canola cytosol 0.47 18.18
CDY46864 Canola nucleus 13.62 17.37
CDY23807 Canola nucleus 13.62 17.26
CDY39913 Canola nucleus 14.55 16.71
CDY29162 Canola nucleus 14.32 16.31
CDY48939 Canola nucleus 11.27 15.53
CDY44883 Canola mitochondrion, nucleus 10.8 15.03
CDX70198 Canola mitochondrion, nucleus 10.8 14.98
CDX80717 Canola nucleus, plastid 11.03 14.69
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1GO:A0A078FJ10UniProt:A0A078FJ10EnsemblPlants:CDY12108ProteinID:CDY12108
ProteinID:CDY12108.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00061084001InterPro:IPR004827PFAM:PF00170PFscan:PS50217PANTHER:PTHR13690
PANTHER:PTHR13690:SF76SMART:SM00338SUPFAM:SSF57959UniParc:UPI0004EE5B5DInterPro:bZIPSEG:seg
Description
BnaC03g60240DBnaC03g60240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ10]
Coordinates
chrLK032017:-:574367..576372
Molecular Weight (calculated)
47105.6 Da
IEP (calculated)
6.733
GRAVY (calculated)
-0.909
Length
426 amino acids
Sequence
(BLAST)
001: MGDTDTDMIH RLHSPFGKQP QQLQLNPKPP TSPYSQIQNL NPVGATTSHS RSMSQPSSFF SFDSLPPLSP SPFNNNNNNN PSSSLLPPSP FTRCNSDSSR
101: VVLPPRKSHR RSNSDISGGE SADWSTKTTP PFVKKESGER EDMDDLFSAY MNLENIDALN SPEADRASGT KTNGSDDTEG ESSSVNYESG GDRNNSLKRR
201: AGAGGGDIAP TSRHYRSVSV DSCFMEKMSF GEDSLKPPST NSVDGGSAFS IEFKNGEFNA AEMKKIMAND KLAEMAVSDP KRVKRILANR QSAARSKERK
301: MRYIVELEHK VQTLQTEATT LSAQFTLLQR DMMGLTNHNN ELKFRLQAME QQAQLRDALS EALNGEVQRL KLAIGETSHN ESDRSKMQSL NAEMFQQLNI
401: SQLTQQRQSQ QNQNGTLSAK PESNEL
Best Arabidopsis Sequence Match ( AT4G38900.3 )
(BLAST)
001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE
Arabidopsis Description
Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.