Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015471.1-P | Field mustard | nucleus | 96.44 | 96.68 |
| CDY47713 | Canola | nucleus | 96.18 | 96.43 |
| AT1G06070.1 | Thale cress | nucleus | 86.51 | 80.38 |
| CDX86537 | Canola | nucleus | 79.9 | 79.9 |
| CDY15560 | Canola | nucleus | 77.1 | 79.53 |
| CDY10799 | Canola | nucleus | 65.65 | 69.54 |
| CDY56611 | Canola | nucleus | 64.12 | 68.48 |
| CDY15381 | Canola | nucleus | 64.12 | 68.11 |
| CDY19094 | Canola | nucleus | 54.2 | 66.98 |
| VIT_05s0102g01120.t01 | Wine grape | nucleus | 67.94 | 62.82 |
| Solyc06g053350.2.1 | Tomato | plastid | 65.65 | 59.45 |
| GSMUA_Achr11P... | Banana | nucleus | 53.94 | 56.68 |
| KRH29611 | Soybean | nucleus | 55.47 | 56.62 |
| Zm00001d021189_P001 | Maize | nucleus | 53.18 | 56.49 |
| EER99183 | Sorghum | nucleus | 55.73 | 55.87 |
| Zm00001d006127_P003 | Maize | nucleus | 52.42 | 55.53 |
| TraesCS5B01G301900.1 | Wheat | nucleus | 53.18 | 55.44 |
| TraesCS5A01G299400.1 | Wheat | nucleus | 52.93 | 55.17 |
| TraesCS5D01G308600.1 | Wheat | nucleus | 52.67 | 55.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.47 | 54.64 |
| Os09t0516200-01 | Rice | nucleus | 52.67 | 54.47 |
| KRH24606 | Soybean | nucleus | 54.96 | 54.41 |
| GSMUA_Achr5P25700_001 | Banana | nucleus | 48.6 | 53.8 |
| HORVU7Hr1G056230.2 | Barley | nucleus | 48.35 | 52.05 |
| GSMUA_Achr11P... | Banana | nucleus | 58.78 | 51.56 |
| TraesCS7A01G266400.1 | Wheat | nucleus | 47.58 | 51.23 |
| TraesCS7B01G166100.1 | Wheat | nucleus | 47.58 | 50.54 |
| TraesCS7D01G268400.1 | Wheat | nucleus | 46.31 | 49.46 |
| TraesCS2A01G352100.1 | Wheat | nucleus | 45.55 | 47.99 |
| EES12438 | Sorghum | nucleus | 45.8 | 47.62 |
| HORVU5Hr1G079160.11 | Barley | vacuole | 53.18 | 46.97 |
| Zm00001d003180_P001 | Maize | nucleus | 43.77 | 46.61 |
| Zm00001d031697_P001 | Maize | nucleus | 29.52 | 46.59 |
| EES14151 | Sorghum | nucleus | 44.27 | 45.55 |
| HORVU2Hr1G085560.4 | Barley | nucleus, plastid | 44.02 | 44.82 |
| Zm00001d052717_P001 | Maize | nucleus | 43.51 | 44.65 |
| CDY35020 | Canola | nucleus | 18.32 | 40.91 |
| CDX86512 | Canola | nucleus | 32.32 | 39.94 |
| CDY15590 | Canola | nucleus | 32.57 | 39.88 |
| CDY48943 | Canola | nucleus | 24.43 | 39.83 |
| CDX93167 | Canola | nucleus | 34.1 | 39.07 |
| CDY06974 | Canola | nucleus | 34.86 | 38.92 |
| CDY06231 | Canola | nucleus | 32.06 | 38.77 |
| CDY09952 | Canola | nucleus | 32.06 | 38.41 |
| CDX79976 | Canola | nucleus | 34.1 | 37.64 |
| CDY23889 | Canola | nucleus | 33.84 | 37.46 |
| CDX80722 | Canola | nucleus | 29.52 | 36.02 |
| CDY24896 | Canola | nucleus | 29.77 | 34.51 |
| CDY30752 | Canola | nucleus | 28.5 | 33.94 |
| CDY71925 | Canola | nucleus | 21.88 | 33.86 |
| CDY07597 | Canola | nucleus | 28.5 | 33.53 |
| CDY13830 | Canola | nucleus, plastid | 23.16 | 29.64 |
| CDX72732 | Canola | nucleus | 31.55 | 28.12 |
| CDY15909 | Canola | plastid | 31.55 | 27.93 |
| CDY22407 | Canola | nucleus | 31.3 | 27.64 |
| CDY12108 | Canola | nucleus | 29.77 | 27.46 |
| CDX90298 | Canola | nucleus | 30.03 | 26.94 |
| CDX99610 | Canola | nucleus | 30.28 | 26.92 |
| CDX82008 | Canola | nucleus | 24.68 | 26.08 |
| CDY64520 | Canola | nucleus, plastid | 17.56 | 25.27 |
| CDX71000 | Canola | nucleus, plastid | 17.81 | 25.09 |
| CDX79872 | Canola | nucleus, plastid | 17.81 | 25.0 |
| CDY06053 | Canola | nucleus | 18.07 | 25.0 |
| CDX71974 | Canola | nucleus, plastid | 16.79 | 24.72 |
| CDY22561 | Canola | nucleus, plastid | 16.54 | 24.25 |
| CDY35379 | Canola | nucleus, plastid | 16.03 | 23.51 |
| CDX98266 | Canola | nucleus, plastid | 17.56 | 23.15 |
| CDY56238 | Canola | extracellular | 7.89 | 23.13 |
| CDY46864 | Canola | nucleus | 18.07 | 21.26 |
| CDY23807 | Canola | nucleus | 18.07 | 21.13 |
| CDY39913 | Canola | nucleus | 18.58 | 19.68 |
| CDY29162 | Canola | nucleus | 18.58 | 19.52 |
| CDX82009 | Canola | plastid | 18.58 | 19.06 |
| CDY70502 | Canola | nucleus | 18.32 | 18.65 |
| CDY13828 | Canola | plastid | 18.32 | 18.6 |
| CDX80717 | Canola | nucleus, plastid | 14.5 | 17.81 |
| CDY48939 | Canola | nucleus | 13.99 | 17.8 |
| CDX70198 | Canola | mitochondrion, nucleus | 12.72 | 16.29 |
| CDY44883 | Canola | mitochondrion, nucleus | 12.21 | 15.69 |
| CDY13829 | Canola | cytosol | 0.25 | 9.09 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078F6R3 | UniProt:A0A078F6R3 | EnsemblPlants:CDY10170 | ProteinID:CDY10170 |
| ProteinID:CDY10170.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00031984001 | InterPro:IPR004827 | PFAM:PF00170 | PFscan:PS50217 | PANTHER:PTHR13690 |
| PANTHER:PTHR13690:SF80 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EDE673 | InterPro:bZIP | SEG:seg |
Description
BnaC05g04130DBnaC05g04130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6R3]
Coordinates
chrLK032001:-:358154..360217
Molecular Weight (calculated)
43220.1 Da
IEP (calculated)
6.191
GRAVY (calculated)
-0.863
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKEKSPAPP PSGGLPPPSG RYSAFPPLTP PPSGSSDANR FSHDISRMPD NPPKNLGHRR AHSEILTLPD DLSFDSDLGV VGGAPDGPSF SDDADEDLMS
101: MYLDMDKFNS SASSSCEPAE LVWRNELAST TTPGGVGSSE RPRIRHQHSQ SMDGSTSLMS GSEDVSGGVD SKKAISAAKL SELALIDPKR AKRIWANRQS
201: AARSKERKMR YIAELERKVQ TLQTEATTLS AQLTLLQRDT NGLSVENHEL KLRVQTVEQQ VHLQDALNDA LKEEVQHLKV LTGQGVSNGG ASSVMNYGSF
301: GSSNQQFYTN NQSMHTMQAT QQFQQLQIHS QKQQQQFQFQ QQQQLYQLQL QQQRIQQQEQ QSGVAEPRRP MSSSGQKESV TSSPDLESPS TKD
101: MYLDMDKFNS SASSSCEPAE LVWRNELAST TTPGGVGSSE RPRIRHQHSQ SMDGSTSLMS GSEDVSGGVD SKKAISAAKL SELALIDPKR AKRIWANRQS
201: AARSKERKMR YIAELERKVQ TLQTEATTLS AQLTLLQRDT NGLSVENHEL KLRVQTVEQQ VHLQDALNDA LKEEVQHLKV LTGQGVSNGG ASSVMNYGSF
301: GSSNQQFYTN NQSMHTMQAT QQFQQLQIHS QKQQQQFQFQ QQQQLYQLQL QQQRIQQQEQ QSGVAEPRRP MSSSGQKESV TSSPDLESPS TKD
001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD
Arabidopsis Description
At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.