Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G301900.1 | Wheat | nucleus | 97.87 | 97.61 |
| TraesCS5A01G299400.1 | Wheat | nucleus | 96.81 | 96.55 |
| HORVU5Hr1G079160.11 | Barley | vacuole | 97.34 | 82.25 |
| Os09t0516200-01 | Rice | nucleus | 81.38 | 80.53 |
| Zm00001d006127_P003 | Maize | nucleus | 77.66 | 78.71 |
| Zm00001d021189_P001 | Maize | nucleus | 77.39 | 78.65 |
| EER99183 | Sorghum | nucleus | 80.85 | 77.55 |
| TraesCS7D01G268400.1 | Wheat | nucleus | 53.99 | 55.16 |
| CDY56611 | Canola | nucleus | 52.93 | 54.08 |
| CDY10799 | Canola | nucleus | 52.66 | 53.37 |
| Bra018250.1-P | Field mustard | nucleus | 52.66 | 52.94 |
| CDY10170 | Canola | nucleus | 55.05 | 52.67 |
| CDY47713 | Canola | nucleus | 54.79 | 52.55 |
| Bra015471.1-P | Field mustard | nucleus | 54.79 | 52.55 |
| CDY19094 | Canola | nucleus | 44.41 | 52.52 |
| CDY15560 | Canola | nucleus | 52.93 | 52.23 |
| Bra030637.1-P | Field mustard | nucleus | 52.93 | 52.23 |
| GSMUA_Achr11P... | Banana | nucleus | 51.86 | 52.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.79 | 51.63 |
| CDY15381 | Canola | nucleus | 50.53 | 51.35 |
| GSMUA_Achr11P... | Banana | nucleus | 60.9 | 51.12 |
| AT2G31370.6 | Thale cress | nucleus | 53.99 | 51.01 |
| CDX86537 | Canola | nucleus | 52.66 | 50.38 |
| VIT_05s0102g01120.t01 | Wine grape | nucleus | 56.91 | 50.35 |
| KRH10117 | Soybean | nucleus | 55.59 | 49.76 |
| GSMUA_Achr5P25700_001 | Banana | nucleus | 46.81 | 49.58 |
| KRH23219 | Soybean | nucleus | 56.38 | 49.53 |
| AT1G06070.1 | Thale cress | nucleus | 55.05 | 48.94 |
| Bra021735.1-P | Field mustard | nucleus | 43.88 | 48.67 |
| Solyc06g053350.2.1 | Tomato | plastid | 56.12 | 48.62 |
| KRH29611 | Soybean | nucleus | 47.61 | 46.49 |
| KRH24606 | Soybean | nucleus | 48.4 | 45.84 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 35.37 | 40.06 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 34.04 | 38.79 |
| TraesCS4D01G171700.2 | Wheat | nucleus | 35.64 | 37.64 |
| TraesCS4D01G316900.1 | Wheat | nucleus | 25.8 | 37.45 |
| TraesCS2D01G105400.1 | Wheat | nucleus | 34.84 | 35.6 |
| TraesCS1D01G191000.1 | Wheat | nucleus, plastid | 32.98 | 32.12 |
| TraesCS5D01G148700.1 | Wheat | nucleus | 19.15 | 30.13 |
| TraesCS7D01G269300.1 | Wheat | nucleus | 34.57 | 27.48 |
| TraesCS3D01G293500.1 | Wheat | nucleus | 19.15 | 26.87 |
| TraesCS3D01G148200.1 | Wheat | nucleus | 21.28 | 26.23 |
| TraesCS2D01G144300.1 | Wheat | nucleus | 20.48 | 25.16 |
| TraesCS5D01G315400.1 | Wheat | plastid | 23.94 | 19.27 |
| TraesCS4D01G105100.1 | Wheat | mitochondrion | 16.49 | 17.92 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 11.7 | 13.62 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G308600.1 | EnsemblPlantsGene:TraesCS5D01G308600 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | ncoils:Coil | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF80 | PFAM:PF00170 | PFscan:PS50217 |
| SEG:seg | SMART:SM00338 | SUPFAM:SSF57959 | TIGR:cd14703 | MapMan:15.5.4.1 | : |
Description
No Description!
Coordinates
chr5D:-:405395346..405398959
Molecular Weight (calculated)
40906.2 Da
IEP (calculated)
7.211
GRAVY (calculated)
-0.838
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKDRSRISA DGGGGDGLPP QPSRRSATPP PEYDISRMPD FPTRNPGHRR AHSEILSLPD DLDLCAPGGG DGPSLSDEND EELFSMFLDV DKLNSSCGPS
101: SDQAESSSAA AAGGGEAARA GHVMRPKHQH SQSMDESMSI KAEDLVGAPG MEGMSTVEAK KAVSAAKLAE LALVDPKRAK RIWANRQSAA RSKERKMRYI
201: GELERKVQTL QTEATTLSAQ LSLLQRDTSG LTSENSELKI RLQNMEQQVH LQDALNDTLK TEVQRLKVAT GQMGNGGGML MNYGGMSQAP HQFGGSQQMF
301: HSNQSMQSLL ATHQLQQLQL HQQPQQQQQP MRPQHHQQQQ QPLHPLQAQQ FQQAARDLKM KGPMWGDGKS PGGGGI
101: SDQAESSSAA AAGGGEAARA GHVMRPKHQH SQSMDESMSI KAEDLVGAPG MEGMSTVEAK KAVSAAKLAE LALVDPKRAK RIWANRQSAA RSKERKMRYI
201: GELERKVQTL QTEATTLSAQ LSLLQRDTSG LTSENSELKI RLQNMEQQVH LQDALNDTLK TEVQRLKVAT GQMGNGGGML MNYGGMSQAP HQFGGSQQMF
301: HSNQSMQSLL ATHQLQQLQL HQQPQQQQQP MRPQHHQQQQ QPLHPLQAQQ FQQAARDLKM KGPMWGDGKS PGGGGI
001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD
Arabidopsis Description
At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.