Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10170 | Canola | nucleus | 80.38 | 86.51 |
| Bra015471.1-P | Field mustard | nucleus | 79.91 | 86.22 |
| Bra030637.1-P | Field mustard | nucleus | 77.54 | 86.09 |
| CDX86537 | Canola | nucleus | 79.91 | 86.01 |
| CDY47713 | Canola | nucleus | 79.67 | 85.97 |
| CDY15560 | Canola | nucleus | 77.07 | 85.56 |
| AT2G31370.6 | Thale cress | nucleus | 68.79 | 73.12 |
| VIT_05s0102g01120.t01 | Wine grape | nucleus | 67.38 | 67.06 |
| Solyc06g053350.2.1 | Tomato | plastid | 65.96 | 64.29 |
| GSMUA_Achr11P... | Banana | nucleus | 51.77 | 58.56 |
| KRH29611 | Soybean | nucleus | 52.96 | 58.18 |
| Zm00001d021189_P001 | Maize | nucleus | 49.41 | 56.49 |
| KRH24606 | Soybean | nucleus | 52.96 | 56.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.48 | 55.64 |
| EER99183 | Sorghum | nucleus | 51.54 | 55.61 |
| GSMUA_Achr5P25700_001 | Banana | nucleus | 46.57 | 55.49 |
| TraesCS5B01G301900.1 | Wheat | nucleus | 49.41 | 55.44 |
| TraesCS5A01G299400.1 | Wheat | nucleus | 49.41 | 55.44 |
| Os09t0516200-01 | Rice | nucleus | 49.65 | 55.26 |
| Zm00001d006127_P003 | Maize | nucleus | 48.46 | 55.26 |
| GSMUA_Achr11P... | Banana | nucleus | 58.39 | 55.13 |
| TraesCS5D01G308600.1 | Wheat | nucleus | 48.94 | 55.05 |
| HORVU7Hr1G056230.2 | Barley | nucleus | 45.15 | 52.33 |
| TraesCS7A01G266400.1 | Wheat | nucleus | 44.68 | 51.78 |
| TraesCS7B01G166100.1 | Wheat | nucleus | 44.44 | 50.81 |
| TraesCS7D01G268400.1 | Wheat | nucleus | 43.5 | 50.0 |
| TraesCS2A01G352100.1 | Wheat | nucleus | 43.97 | 49.87 |
| EES12438 | Sorghum | nucleus | 43.5 | 48.68 |
| Zm00001d003180_P001 | Maize | nucleus | 41.61 | 47.7 |
| HORVU5Hr1G079160.11 | Barley | vacuole | 49.65 | 47.19 |
| HORVU2Hr1G085560.4 | Barley | nucleus, plastid | 42.32 | 46.37 |
| Zm00001d031697_P001 | Maize | nucleus | 27.19 | 46.18 |
| EES14151 | Sorghum | nucleus | 40.9 | 45.29 |
| Zm00001d052717_P001 | Maize | nucleus | 40.43 | 44.65 |
| AT1G06850.1 | Thale cress | nucleus | 29.31 | 36.8 |
| AT2G40620.1 | Thale cress | nucleus | 31.44 | 36.24 |
| AT1G43700.1 | Thale cress | nucleus | 27.42 | 34.02 |
| AT2G12900.1 | Thale cress | plastid | 16.08 | 25.76 |
| AT2G13150.1 | Thale cress | plastid | 15.6 | 25.19 |
| AT2G21230.3 | Thale cress | nucleus | 30.26 | 24.38 |
| AT4G38900.1 | Thale cress | nucleus | 31.44 | 24.05 |
| AT2G12940.1 | Thale cress | plastid | 16.31 | 23.47 |
| AT3G58120.1 | Thale cress | nucleus | 17.49 | 22.49 |
| AT2G42380.2 | Thale cress | nucleus, plastid | 16.78 | 22.12 |
| AT1G58110.2 | Thale cress | nucleus | 17.49 | 19.79 |
| AT1G35490.1 | Thale cress | nucleus | 13.48 | 19.0 |
| AT4G06598.1 | Thale cress | nucleus | 11.35 | 18.11 |
| AT5G04840.1 | Thale cress | plastid | 12.53 | 17.26 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:837116 | UniProt:A0A178WMD0 | ProteinID:AAF80130.1 | ProteinID:AEE27936.1 |
| EMBL:AJ419854 | EMBL:AK229666 | ArrayExpress:AT1G06070 | EnsemblPlantsGene:AT1G06070 | RefSeq:AT1G06070 | TAIR:AT1G06070 |
| RefSeq:AT1G06070-TAIR-G | EnsemblPlants:AT1G06070.1 | TAIR:AT1G06070.1 | Unigene:At.70161 | EMBL:BT028965 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 | RefSeq:NP_172097.1 |
| ProteinID:OAP19354.1 | PFAM:PF00170 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF80 |
| UniProt:Q9LNE0 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000005E826 | InterPro:bZIP | SEG:seg |
Description
At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
Coordinates
chr1:-:1834829..1837758
Molecular Weight (calculated)
47133.6 Da
IEP (calculated)
6.361
GRAVY (calculated)
-1.013
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.