Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48943 | Canola | nucleus | 57.18 | 80.91 |
| Bra032191.1-P | Field mustard | nucleus | 77.71 | 80.3 |
| CDY30752 | Canola | nucleus | 77.13 | 79.7 |
| CDX80722 | Canola | nucleus | 75.07 | 79.5 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 60.12 | 77.95 |
| CDY71925 | Canola | nucleus | 56.3 | 75.59 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 43.4 | 56.7 |
| Solyc06g060490.2.1 | Tomato | nucleus | 45.45 | 55.96 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 51.91 | 50.57 |
| Solyc04g071160.2.1 | Tomato | nucleus | 50.44 | 50.44 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 41.35 | 50.36 |
| PGSC0003DMT400002100 | Potato | nucleus | 50.15 | 50.29 |
| PGSC0003DMT400045314 | Potato | nucleus | 47.8 | 50.0 |
| KRH70316 | Soybean | nucleus | 47.51 | 49.09 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 28.45 | 48.5 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 44.57 | 47.06 |
| Os11t0160500-01 | Rice | nucleus, plasma membrane | 32.55 | 47.03 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 44.87 | 46.5 |
| EES08023 | Sorghum | nucleus | 46.04 | 46.18 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 44.57 | 46.06 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 44.57 | 45.92 |
| Os12t0162500-01 | Rice | plasma membrane | 43.99 | 45.73 |
| TraesCS5A01G124600.1 | Wheat | nucleus | 44.28 | 45.48 |
| Zm00001d053162_P003 | Maize | nucleus | 44.87 | 45.27 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 43.99 | 45.18 |
| Zm00001d041920_P001 | Maize | nucleus | 42.52 | 45.17 |
| EES15709 | Sorghum | nucleus | 45.16 | 44.13 |
| GSMUA_Achr10P... | Banana | nucleus | 40.47 | 44.09 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 37.54 | 43.69 |
| Zm00001d004857_P001 | Maize | nucleus | 44.28 | 43.14 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 43.11 | 41.18 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 34.02 | 40.85 |
| GSMUA_Achr10P... | Banana | nucleus | 38.12 | 38.69 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 43.99 | 37.69 |
| KRH08713 | Soybean | nucleus | 44.57 | 35.68 |
| AT1G06850.1 | Thale cress | nucleus | 31.09 | 31.45 |
| AT2G31370.6 | Thale cress | nucleus | 35.19 | 30.15 |
| AT2G40620.1 | Thale cress | nucleus | 31.67 | 29.43 |
| AT1G06070.1 | Thale cress | nucleus | 34.02 | 27.42 |
| AT2G13150.1 | Thale cress | plastid | 19.06 | 24.81 |
| AT2G12900.1 | Thale cress | plastid | 16.72 | 21.59 |
| AT2G12940.1 | Thale cress | plastid | 17.89 | 20.75 |
| AT3G58120.1 | Thale cress | nucleus | 19.94 | 20.67 |
| AT2G42380.2 | Thale cress | nucleus, plastid | 19.35 | 20.56 |
| AT2G21230.3 | Thale cress | nucleus | 28.74 | 18.67 |
| AT4G38900.1 | Thale cress | nucleus | 30.21 | 18.63 |
| AT1G58110.2 | Thale cress | nucleus | 18.77 | 17.11 |
| AT1G35490.1 | Thale cress | nucleus | 13.78 | 15.67 |
| AT4G06598.1 | Thale cress | nucleus | 11.44 | 14.72 |
| AT5G04840.1 | Thale cress | plastid | 12.02 | 13.36 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:840957 | ProteinID:AAF63120.1 | ProteinID:AEE31988.1 | EMBL:AF225983 |
| ArrayExpress:AT1G43700 | EnsemblPlantsGene:AT1G43700 | RefSeq:AT1G43700 | TAIR:AT1G43700 | RefSeq:AT1G43700-TAIR-G | EnsemblPlants:AT1G43700.1 |
| TAIR:AT1G43700.1 | EMBL:AY065453 | EMBL:AY085857 | EMBL:AY117284 | Unigene:At.22614 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007231 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008272 | GO:GO:0009058 | GO:GO:0009294 | GO:GO:0009605 | GO:GO:0009606 |
| GO:GO:0009628 | GO:GO:0009652 | GO:GO:0009970 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0043621 | GO:GO:0045596 | GO:GO:0051019 | GO:GO:0051170 | InterPro:IPR004827 |
| RefSeq:NP_564486.1 | PFAM:PF00170 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 |
| UniProt:Q9MA75 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI00000A561A | Symbol:VIP1 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
Coordinates
chr1:+:16484231..16486327
Molecular Weight (calculated)
37793.1 Da
IEP (calculated)
7.326
GRAVY (calculated)
-0.884
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.