CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES08023
EES15709

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	EES08023	AT1G43700.1	15824315
AT1G43700.1	EES15709	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041920_P001	Maize	nucleus	84.24	91.59
Os12t0162500-01	Rice	plasma membrane	80.23	85.37
EES08023	Sorghum	nucleus	75.93	77.94
Zm00001d023507_P001	Maize	nucleus, plastid	86.25	75.63
Os11t0160500-01	Rice	nucleus, plasma membrane	51.0	75.42
GSMUA_Achr3P19170_001	Banana	nucleus	40.11	70.0
GSMUA_Achr6P18130_001	Banana	nucleus	54.44	64.85
GSMUA_Achr10P...	Banana	nucleus	56.16	62.62
GSMUA_Achr6P13040_001	Banana	nucleus	48.14	59.15
Solyc06g060490.2.1	Tomato	nucleus	44.41	55.96
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	41.55	55.56
GSMUA_Achr10P...	Banana	nucleus	51.29	53.27
PGSC0003DMT400045314	Potato	nucleus	49.0	52.45
CDY48943	Canola	nucleus	34.96	50.62
VIT_18s0076g00330.t01	Wine grape	nucleus	50.72	50.57
PGSC0003DMT400002100	Potato	nucleus	48.71	50.0
Solyc04g071160.2.1	Tomato	nucleus	48.71	49.85
KRH70316	Soybean	nucleus	46.99	49.7
Bra034916.1-P	Field mustard	nucleus, plastid	35.82	47.53
CDY30752	Canola	nucleus	44.13	46.67
Bra032191.1-P	Field mustard	nucleus	44.13	46.67
AT1G43700.1	Thale cress	nucleus	44.13	45.16
CDX80722	Canola	nucleus	41.55	45.03
CDY71925	Canola	nucleus	31.23	42.91
KRH08713	Soybean	nucleus	44.13	36.15
EER99183	Sorghum	nucleus	39.26	34.95
OQU92641	Sorghum	nucleus	34.67	34.67
OQU92255	Sorghum	nucleus	29.8	34.1
EES12438	Sorghum	nucleus	35.53	32.8
OQU90478	Sorghum	nucleus	34.96	32.28
EES14151	Sorghum	nucleus	34.96	31.94
KXG40277	Sorghum	nucleus	32.95	26.68
EES01493	Sorghum	nucleus	19.77	25.0
EES04836	Sorghum	nucleus	18.34	24.71
EES15257	Sorghum	nucleus	33.52	23.78
OQU89248	Sorghum	nucleus	14.9	21.58
EER97061	Sorghum	nucleus	29.51	20.6
KXG28232	Sorghum	mitochondrion	18.34	17.88
KXG23197	Sorghum	mitochondrion	18.34	17.73
EES00074	Sorghum	nucleus, plastid	19.48	16.5
EES06922	Sorghum	nucleus	12.61	13.62
OQU83785	Sorghum	plastid	18.05	9.75
OQU83493	Sorghum	nucleus	16.05	7.33

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8073481	UniProt:C5YS97	ncoils:Coil	EnsemblPlants:EES15709
ProteinID:EES15709	ProteinID:EES15709.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338	EnsemblPlantsGene:SORBI_3008G046600
SUPFAM:SSF57959	unigene:Sbi.19770	UniParc:UPI0001A885F8	RefSeq:XP_002441871.1	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:4586749..4590459

Molecular Weight (calculated)

37466.5 Da

IEP (calculated)

7.100

GRAVY (calculated)

-0.797

Length

349 amino acids

Sequence
(BLAST)

001: MDPRFALPAA PAPSTGGGGG GFARGHHRRA HSETFLRFAD ADLLLDPDGD FSFSDLDFPS LSDDSPAASD PTPPPPPLPQ QQQQQQAAPA PAPAPRPPGG
101: GAHTRSLSLD AAFFEGLSFQ GPSASGSGSA GGGPGHKRSG SMDGSTSPFE GESALSSGLP DYAKKAMPAE RIAELALIDP KRAKRILANR QSAARSKERK
201: IKYTSELERK VQTLQTEATT LSAQLTLLQR DTTGLTTENR ELKLRLQSME EQAKLRDALN EALREEVQRL KIAAGQVGNM NGNPFNGGLQ QQIPSYFVQQ
301: QQQQQQQQQM SYFGGHQAQH HNQNHRHQSP SNGGQSLSGQ SLNDSMDFI

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.