Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002100 | |
| PGSC0003DMT400045314 | |
| PGSC0003DMT400074878 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43700.1 | PGSC0003DMT400002100 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | PGSC0003DMT400045314 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | PGSC0003DMT400074878 | AT1G43700.1 | 15824315 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 75.0 | 97.7 |
| Solyc04g071160.2.1 | Tomato | nucleus | 97.94 | 97.65 |
| PGSC0003DMT400045314 | Potato | nucleus | 74.41 | 77.61 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 60.29 | 58.57 |
| CDY48943 | Canola | nucleus | 39.71 | 56.02 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 31.76 | 54.0 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 44.41 | 53.93 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 41.47 | 53.61 |
| KRH70316 | Soybean | nucleus | 51.76 | 53.33 |
| CDX80722 | Canola | nucleus | 48.24 | 50.93 |
| CDY30752 | Canola | nucleus | 49.12 | 50.61 |
| Bra032191.1-P | Field mustard | nucleus | 49.12 | 50.61 |
| Os12t0162500-01 | Rice | plasma membrane | 48.53 | 50.3 |
| AT1G43700.1 | Thale cress | nucleus | 50.29 | 50.15 |
| Os11t0160500-01 | Rice | nucleus, plasma membrane | 34.71 | 50.0 |
| EES08023 | Sorghum | nucleus | 49.71 | 49.71 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 47.06 | 49.54 |
| Zm00001d053162_P003 | Maize | nucleus | 49.12 | 49.41 |
| TraesCS5A01G124600.1 | Wheat | nucleus | 48.24 | 49.4 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 47.94 | 49.1 |
| EES15709 | Sorghum | nucleus | 50.0 | 48.71 |
| Zm00001d041920_P001 | Maize | nucleus | 45.88 | 48.6 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 46.76 | 48.33 |
| Zm00001d004857_P001 | Maize | nucleus | 49.71 | 48.29 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 46.76 | 48.18 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 41.47 | 48.12 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 46.47 | 47.73 |
| CDY71925 | Canola | nucleus | 34.41 | 46.06 |
| GSMUA_Achr10P... | Banana | nucleus | 41.76 | 45.37 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 47.06 | 44.82 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 37.35 | 44.72 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 48.82 | 41.71 |
| GSMUA_Achr10P... | Banana | nucleus | 41.18 | 41.67 |
| PGSC0003DMT400042946 | Potato | plastid | 37.06 | 38.89 |
| KRH08713 | Soybean | nucleus | 48.24 | 38.5 |
| PGSC0003DMT400070968 | Potato | nucleus | 37.06 | 36.1 |
| PGSC0003DMT400009538 | Potato | nucleus | 30.88 | 23.65 |
| PGSC0003DMT400032381 | Potato | nucleus, plastid | 19.12 | 22.49 |
| PGSC0003DMT400024289 | Potato | nucleus | 20.0 | 22.44 |
| PGSC0003DMT400004178 | Potato | nucleus | 36.18 | 21.32 |
| PGSC0003DMT400020206 | Potato | nucleus | 19.12 | 21.31 |
| PGSC0003DMT400024003 | Potato | nucleus | 17.35 | 17.0 |
| PGSC0003DMT400064169 | Potato | nucleus | 17.65 | 16.44 |
| PGSC0003DMT400005064 | Potato | nucleus | 14.12 | 15.69 |
Protein Annotations
| Gene3D:1.20.5.170 | EntrezGene:102579710 | MapMan:15.5.4.1 | ProteinID:ADO23656 | ProteinID:ADO23656.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EMBL:HQ335343 | InterPro:IPR004827 | UniProt:M0ZJL6 | PFAM:PF00170 |
| EnsemblPlantsGene:PGSC0003DMG400000799 | PGSC:PGSC0003DMG400000799 | EnsemblPlants:PGSC0003DMT400002100 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 |
| SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000296DA2B | RefSeq:XP_006362824.1 | InterPro:bZIP | SEG:seg |
Description
BZIP transcriptional activator RSG [Source:PGSC_GENE;Acc:PGSC0003DMG400000799]
Coordinates
chr4:-:59168928..59175165
Molecular Weight (calculated)
37453.7 Da
IEP (calculated)
6.975
GRAVY (calculated)
-0.759
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKFTGKPI PIPFLPGRID LDQMPDTPTR IARHRRAQSE TFFRFPDFDD DILLDDVVAD FNLDISAPAL SPSTDTHMQP ANSADSSSNG PGADHNPRPL
101: NHFRSLSVDA DFFDGLEFGE AGATTPAASE EKKMMGLGSG SSSRHRHSNS MDGSFSAASF EAESSVKKAM APDRLAELAL IDPKRAKRIL ANRQSAARSK
201: ERKIRYTSEL ERKVQTLQSE ATTLSAQITV LQRDNSGLTT ENKELKLRLQ ALEQEAHLRD ALNEALREEL QHLKITAGQM SAANGSRGAR PHFPPQPQSF
301: VQCGNHHTQQ QQPHMPQSTT STQNIGGQTQ PSFMNFNNRG
101: NHFRSLSVDA DFFDGLEFGE AGATTPAASE EKKMMGLGSG SSSRHRHSNS MDGSFSAASF EAESSVKKAM APDRLAELAL IDPKRAKRIL ANRQSAARSK
201: ERKIRYTSEL ERKVQTLQSE ATTLSAQITV LQRDNSGLTT ENKELKLRLQ ALEQEAHLRD ALNEALREEL QHLKITAGQM SAANGSRGAR PHFPPQPQSF
301: VQCGNHHTQQ QQPHMPQSTT STQNIGGQTQ PSFMNFNNRG
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.