Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002094 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04840.1 | PGSC0003DMT400002094 | AT1G76920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g006490.1.1 | Tomato | nucleus | 96.41 | 96.09 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 55.88 | 55.52 |
| AT5G04840.1 | Thale cress | plastid | 46.73 | 46.58 |
| CDX70198 | Canola | mitochondrion, nucleus | 44.12 | 43.97 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 43.79 | 43.65 |
| CDY44883 | Canola | mitochondrion, nucleus | 43.14 | 43.14 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 39.54 | 37.46 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 39.54 | 37.46 |
| EES06922 | Sorghum | nucleus | 39.22 | 37.15 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 39.54 | 37.12 |
| Zm00001d016732_P003 | Maize | nucleus | 38.24 | 36.56 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 38.56 | 36.53 |
| Zm00001d050669_P001 | Maize | nucleus | 38.24 | 36.34 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 37.91 | 36.02 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 38.89 | 34.9 |
| GSMUA_Achr10P... | Banana | nucleus | 33.66 | 31.5 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 38.89 | 30.75 |
| PGSC0003DMT400024289 | Potato | nucleus | 25.16 | 25.41 |
| PGSC0003DMT400020206 | Potato | nucleus | 22.88 | 22.95 |
| PGSC0003DMT400024003 | Potato | nucleus | 25.49 | 22.48 |
| PGSC0003DMT400064169 | Potato | nucleus | 26.14 | 21.92 |
| PGSC0003DMT400032381 | Potato | nucleus, plastid | 19.93 | 21.11 |
| PGSC0003DMT400045314 | Potato | nucleus | 16.67 | 15.64 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 12.42 | 14.56 |
| PGSC0003DMT400042946 | Potato | plastid | 15.36 | 14.51 |
| PGSC0003DMT400002100 | Potato | nucleus | 15.69 | 14.12 |
| PGSC0003DMT400009538 | Potato | nucleus | 18.95 | 13.06 |
| PGSC0003DMT400070968 | Potato | nucleus | 14.38 | 12.61 |
| PGSC0003DMT400004178 | Potato | nucleus | 19.93 | 10.57 |
Protein Annotations
| EntrezGene:102578627 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| UniProt:M0ZPE7 | EnsemblPlantsGene:PGSC0003DMG400001999 | PGSC:PGSC0003DMG400001999 | EnsemblPlants:PGSC0003DMT400005064 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 |
| SMART:SM00338 | UniParc:UPI000295211E | RefSeq:XP_006365676.1 | RefSeq:XP_015160041.1 | InterPro:bZIP | SEG:seg |
Description
BZIP protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001999]
Coordinates
chr11:-:6074381..6082545
Molecular Weight (calculated)
33933.9 Da
IEP (calculated)
7.467
GRAVY (calculated)
-0.609
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRQAHLPPR CPFQKKPLTC PVQDPFSPPS HQHNSLPPRH QKSISQSSIL EEQPAWLDEL LSDSGSNSSG IMHRRSASDS LTVLDGLVSF EGFDKFDETE
101: SNASCESDSS SKTNCIYGPN SPRGKSNITF AENAIVSALS EYVSPNPLQY LDRCVSVSGA AQLELVGNAS GAADDVSAEA KPMKRHPGQR SRVRKLQYIA
201: ELERTVNTYE AIESDLTAKV ASLLQQRATL SMENRELKQQ MLRLQQEKVI VDAQYRSLRK ELERLKCLAR SRNGKLSTNF RLSSATEMTG SDAAWQMLDF
301: GKLDLN
101: SNASCESDSS SKTNCIYGPN SPRGKSNITF AENAIVSALS EYVSPNPLQY LDRCVSVSGA AQLELVGNAS GAADDVSAEA KPMKRHPGQR SRVRKLQYIA
201: ELERTVNTYE AIESDLTAKV ASLLQQRATL SMENRELKQQ MLRLQQEKVI VDAQYRSLRK ELERLKCLAR SRNGKLSTNF RLSSATEMTG SDAAWQMLDF
301: GKLDLN
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.