Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0076g00350.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04840.1 | VIT_18s0076g00350.t01 | AT1G76920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005064 | Potato | nucleus | 55.52 | 55.88 |
| Solyc11g006490.1.1 | Tomato | nucleus | 54.87 | 55.05 |
| AT5G04840.1 | Thale cress | plastid | 49.35 | 49.51 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 46.1 | 46.25 |
| CDY44883 | Canola | mitochondrion, nucleus | 45.78 | 46.08 |
| CDX70198 | Canola | mitochondrion, nucleus | 45.78 | 45.93 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 42.21 | 38.12 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 38.31 | 36.53 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 37.99 | 36.22 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 37.34 | 35.71 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 37.34 | 35.6 |
| Zm00001d016732_P003 | Maize | nucleus | 36.69 | 35.31 |
| EES06922 | Sorghum | nucleus | 37.01 | 35.29 |
| Zm00001d050669_P001 | Maize | nucleus | 36.69 | 35.09 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 37.01 | 34.97 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 33.64 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 41.23 | 32.82 |
| VIT_12s0028g02590.t01 | Wine grape | nucleus, plastid | 23.38 | 24.41 |
| VIT_18s0001g13740.t01 | Wine grape | nucleus | 10.39 | 24.24 |
| VIT_19s0014g01780.t01 | Wine grape | nucleus | 23.7 | 23.62 |
| VIT_12s0035g00620.t01 | Wine grape | nucleus | 26.95 | 22.19 |
| VIT_18s0001g03010.t01 | Wine grape | nucleus | 16.23 | 18.38 |
| VIT_06s0004g08070.t01 | Wine grape | plastid | 15.91 | 14.33 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 16.23 | 14.29 |
| VIT_13s0067g02900.t01 | Wine grape | nucleus | 16.56 | 14.21 |
| VIT_05s0102g01120.t01 | Wine grape | nucleus | 17.21 | 12.47 |
| VIT_03s0038g00860.t01 | Wine grape | nucleus | 20.45 | 9.32 |
Protein Annotations
| EntrezGene:100250801 | wikigene:100250801 | MapMan:15.5.4.1 | ProteinID:CBI24998 | ProteinID:CBI24998.3 | ncoils:Coil |
| UniProt:D7T3B3 | EMBL:FN595510 | EntrezGene:LOC100250801 | wikigene:LOC100250801 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 |
| UniParc:UPI00015CC671 | ArrayExpress:VIT_13s0073g00430 | EnsemblPlantsGene:VIT_13s0073g00430 | EnsemblPlants:VIT_13s0073g00430.t01 | unigene:Vvi.24856 | RefSeq:XP_002262794 |
| RefSeq:XP_002262794.1 | RefSeq:XP_010658898.1 | RefSeq:XP_010658899.1 | RefSeq:XP_010658901.1 | RefSeq:XP_010658902.1 | RefSeq:XP_010658903.1 |
| RefSeq:XP_010658904.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:14221999..14232959
Molecular Weight (calculated)
34236.4 Da
IEP (calculated)
7.153
GRAVY (calculated)
-0.635
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRQANLPPR CPFQKKPITR PIHDPIFPNL GNDNELYPRH HKSSSQSSIS EEQPAWFDDL LNDPDSNLRG ICHRRSASDS VALLDGVVDH FPSLKPLKDD
101: ENSVCDRIGS GLESACMYGP NSPRQRGNQT FSENAIASAL SEYASKSPLE DLDGSFCISG INQFDLKENA CGADGELNAE TKAVKRHSGQ RSRVRKLQYI
201: AELERTVDVY QTLESELAIR VASLLQLRVA LSMENSKLKQ QLAKLQQQKL IMDGQHKSLR KEVERMKGGL ADSINSQIRT YTGSSTGAEA VRSEVSWLKL
301: DIGKLNLD
101: ENSVCDRIGS GLESACMYGP NSPRQRGNQT FSENAIASAL SEYASKSPLE DLDGSFCISG INQFDLKENA CGADGELNAE TKAVKRHSGQ RSRVRKLQYI
201: AELERTVDVY QTLESELAIR VASLLQLRVA LSMENSKLKQ QLAKLQQQKL IMDGQHKSLR KEVERMKGGL ADSINSQIRT YTGSSTGAEA VRSEVSWLKL
301: DIGKLNLD
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.