Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06922 | Sorghum | nucleus | 89.44 | 89.16 |
| Zm00001d016732_P003 | Maize | nucleus | 86.02 | 86.56 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 75.16 | 74.92 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 75.16 | 74.23 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 73.6 | 73.37 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 73.6 | 73.37 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 72.05 | 72.05 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 48.76 | 46.04 |
| GSMUA_Achr10P... | Banana | nucleus | 44.1 | 43.43 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 47.52 | 39.53 |
| PGSC0003DMT400005064 | Potato | nucleus | 36.34 | 38.24 |
| Solyc11g006490.1.1 | Tomato | nucleus | 36.02 | 37.78 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 35.09 | 36.69 |
| AT5G04840.1 | Thale cress | plastid | 33.54 | 35.18 |
| CDX70198 | Canola | mitochondrion, nucleus | 31.37 | 32.9 |
| CDY44883 | Canola | mitochondrion, nucleus | 31.06 | 32.68 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 31.06 | 32.57 |
| Zm00001d016154_P001 | Maize | nucleus | 20.5 | 26.19 |
| Zm00001d039383_P001 | Maize | nucleus | 22.67 | 25.35 |
| Zm00001d043420_P001 | Maize | nucleus | 21.74 | 25.18 |
| Zm00001d041831_P001 | Maize | mitochondrion | 27.02 | 25.0 |
| Zm00001d053442_P001 | Maize | nucleus | 19.57 | 24.42 |
| Zm00001d012719_P001 | Maize | nucleus | 21.12 | 24.29 |
| Zm00001d049135_P001 | Maize | mitochondrion | 24.53 | 22.64 |
| Zm00001d035240_P001 | Maize | nucleus | 11.18 | 15.93 |
| Zm00001d031697_P001 | Maize | nucleus | 12.11 | 15.66 |
| Zm00001d047519_P001 | Maize | nucleus | 17.08 | 15.58 |
| Zm00001d007172_P001 | Maize | plastid | 16.77 | 14.92 |
| Zm00001d029064_P001 | Maize | nucleus | 15.84 | 14.74 |
| Zm00001d022442_P001 | Maize | nucleus | 16.77 | 14.44 |
| Zm00001d006127_P003 | Maize | nucleus | 16.46 | 14.29 |
| Zm00001d052717_P001 | Maize | nucleus | 16.46 | 13.84 |
| Zm00001d004857_P001 | Maize | nucleus | 14.91 | 13.71 |
| Zm00001d048455_P001 | Maize | nucleus | 14.29 | 13.65 |
| Zm00001d053162_P003 | Maize | nucleus | 14.29 | 13.61 |
| Zm00001d021189_P001 | Maize | nucleus | 15.53 | 13.51 |
| Zm00001d029711_P001 | Maize | nucleus | 16.15 | 13.1 |
| Zm00001d003180_P001 | Maize | nucleus | 14.29 | 12.47 |
| Zm00001d041920_P001 | Maize | nucleus | 12.42 | 12.46 |
| Zm00001d021191_P001 | Maize | plastid | 16.15 | 11.4 |
| Zm00001d031723_P002 | Maize | nucleus | 16.46 | 11.4 |
| Zm00001d027461_P001 | Maize | plastid | 14.91 | 11.27 |
| Zm00001d052725_P001 | Maize | nucleus | 15.53 | 10.73 |
| Zm00001d006157_P001 | Maize | nucleus | 15.84 | 10.65 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 12.11 | 9.8 |
| Zm00001d007364_P001 | Maize | nucleus | 11.8 | 5.97 |
Protein Annotations
| EMBL:BT068415 | EnsemblPlants:Zm00001d050669_P001 | EnsemblPlants:Zm00001d050669_T001 | EnsemblPlantsGene:Zm00001d050669 | EntrezGene:100280215 | ncoils:Coil |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 | ProteinID:AQK52901.1 | ProteinID:AQK52902.1 | ProteinID:AQK52903.1 | ProteinID:AQK52904.1 |
| ProteinID:AQK52905.1 | SEG:seg | UniParc:UPI000195CDF1 | UniProt:C0PJE6 | MapMan:15.5.4.1 | : |
Description
bZIP protein
Coordinates
chr4:-:114048204..114058719
Molecular Weight (calculated)
35194.3 Da
IEP (calculated)
5.978
GRAVY (calculated)
-0.517
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRSPHLPPR CPPLGPQITR RDDGMFTQSC RFPSGDTFIG EPPCWLDDLL EDSGKAPKLP PLRRACSDSD AILDALSTFQ SPIYPIEECD LNSGGEAEDL
101: LGGVEGDESG SVVEASCFYG PNSPRQKSRL TTSESSMVNA VLENVPGNPL QYLTIDACSD VNGNVANVTA DACDAFGHPD QDKSFKRRSG QRSRVRKLQY
201: IAELERTVES LQNIGADLAV RMSSLFHLHN ALSMENKQLR IHISSLQQAK LIKDGQTQAL KNEAERLKQM SARHRRSRSV TSCYDLSSFG ADATAVNWQM
301: PDMARLSLNG SSSVSPRSGY GI
101: LGGVEGDESG SVVEASCFYG PNSPRQKSRL TTSESSMVNA VLENVPGNPL QYLTIDACSD VNGNVANVTA DACDAFGHPD QDKSFKRRSG QRSRVRKLQY
201: IAELERTVES LQNIGADLAV RMSSLFHLHN ALSMENKQLR IHISSLQQAK LIKDGQTQAL KNEAERLKQM SARHRRSRSV TSCYDLSSFG ADATAVNWQM
301: PDMARLSLNG SSSVSPRSGY GI
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.