Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04840.1 | EES13145 | AT1G76920.1 | 21798944 |
| AT5G04840.1 | EER92766 | AT3G15000.1 | 21798944 |
| AT5G04840.1 | EER92767 | AT3G15000.1 | 21798944 |
| AT5G04840.1 | OQU89756 | AT3G15000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016732_P003 | Maize | nucleus | 89.16 | 90.0 |
| Zm00001d050669_P001 | Maize | nucleus | 89.16 | 89.44 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 79.88 | 79.88 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 78.33 | 78.33 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 78.02 | 78.02 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 78.33 | 77.61 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 77.09 | 77.33 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 50.46 | 47.8 |
| GSMUA_Achr10P... | Banana | nucleus | 45.82 | 45.26 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 50.15 | 41.86 |
| PGSC0003DMT400005064 | Potato | nucleus | 37.15 | 39.22 |
| Solyc11g006490.1.1 | Tomato | nucleus | 36.84 | 38.76 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 35.29 | 37.01 |
| AT5G04840.1 | Thale cress | plastid | 34.37 | 36.16 |
| CDX70198 | Canola | mitochondrion, nucleus | 32.2 | 33.88 |
| CDY44883 | Canola | mitochondrion, nucleus | 31.89 | 33.66 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 31.89 | 33.55 |
| EES01493 | Sorghum | nucleus | 22.29 | 26.09 |
| EES04836 | Sorghum | nucleus | 20.43 | 25.48 |
| KXG23197 | Sorghum | mitochondrion | 26.93 | 24.1 |
| KXG28232 | Sorghum | mitochondrion | 24.46 | 22.07 |
| EES00074 | Sorghum | nucleus, plastid | 22.6 | 17.72 |
| OQU92641 | Sorghum | nucleus | 17.34 | 16.05 |
| EES08023 | Sorghum | nucleus | 15.48 | 14.71 |
| EES14151 | Sorghum | nucleus | 17.03 | 14.4 |
| OQU90478 | Sorghum | nucleus | 16.41 | 14.02 |
| OQU92255 | Sorghum | nucleus | 13.0 | 13.77 |
| EER99183 | Sorghum | nucleus | 15.79 | 13.01 |
| KXG40277 | Sorghum | nucleus | 17.34 | 12.99 |
| EES12438 | Sorghum | nucleus | 14.86 | 12.7 |
| EES15709 | Sorghum | nucleus | 13.62 | 12.61 |
| EER97061 | Sorghum | nucleus | 17.34 | 11.2 |
| EES15257 | Sorghum | nucleus | 17.03 | 11.18 |
| OQU89248 | Sorghum | nucleus | 7.74 | 10.37 |
| OQU83493 | Sorghum | nucleus | 14.55 | 6.15 |
| OQU83785 | Sorghum | plastid | 12.07 | 6.04 |
Protein Annotations
| EnsemblPlants:EES06922 | EnsemblPlantsGene:SORBI_3004G168800 | EntrezGene:8064231 | Gene3D:1.20.5.170 | ncoils:Coil | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF251 | ProteinID:EES06922 | ProteinID:EES06922.1 | RefSeq:XP_002453946.1 | SEG:seg | unigene:Sbi.12973 |
| UniParc:UPI0001A85BC7 | UniProt:C5XU18 | MapMan:15.5.4.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:51959556..51964243
Molecular Weight (calculated)
34943.9 Da
IEP (calculated)
6.362
GRAVY (calculated)
-0.552
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRSPHLPPR CPPLGPQITR RDDSMFTQSC RFPSGDPFFG EPPCWLDDLL ADSGKAPKLP PLRRACSDSD AILDALSTFQ SPIYPIEEGD LNSGGEGEDL
101: LDAGEGGESG SVVEACCVYG PNSPRQKSRL TSSESSMVNA VLENVPSNPL QYLTIDASSG VNGNVASGTA DASDAFGFGH PDQDKSFKRR SGQRSRVRKL
201: QYIAELERTV DSLQNMGADL AVRVSSLFQL HSALSMENKQ LRMQISSLQH AKLIKDGQTQ ALKNEAERLK QMSARHRRSR SVTSCYDPTS FGADASAVNW
301: QMPDMGRLSL NGSSVSPRGG YGL
101: LDAGEGGESG SVVEACCVYG PNSPRQKSRL TSSESSMVNA VLENVPSNPL QYLTIDASSG VNGNVASGTA DASDAFGFGH PDQDKSFKRR SGQRSRVRKL
201: QYIAELERTV DSLQNMGADL AVRVSSLFQL HSALSMENKQ LRMQISSLQH AKLIKDGQTQ ALKNEAERLK QMSARHRRSR SVTSCYDPTS FGADASAVNW
301: QMPDMGRLSL NGSSVSPRGG YGL
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.