CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016154_P001	Maize	nucleus	86.49	88.89
Zm00001d053442_P001	Maize	nucleus	83.4	83.72
TraesCS5D01G148700.1	Wheat	nucleus	71.81	77.82
TraesCS5B01G142200.1	Wheat	nucleus	71.81	77.82
TraesCS5A01G143300.1	Wheat	nucleus	71.81	77.82
HORVU5Hr1G045690.1	Barley	nucleus	71.81	77.5
GSMUA_Achr3P03550_001	Banana	nucleus	54.05	60.34
GSMUA_Achr3P31390_001	Banana	nucleus	45.17	52.47
EES01493	Sorghum	nucleus	55.6	52.17
GSMUA_Achr7P25310_001	Banana	nucleus	54.44	51.09
GSMUA_Achr4P10560_001	Banana	nucleus	50.97	48.71
KRH27307	Soybean	plastid	52.12	47.37
KRH22014	Soybean	nucleus, plastid	55.6	45.0
VIT_19s0014g01780.t01	Wine grape	nucleus	53.28	44.66
PGSC0003DMT400032381	Potato	nucleus, plastid	48.65	43.6
Solyc07g062710.2.1	Tomato	nucleus, plastid	50.58	43.38
EES00074	Sorghum	nucleus, plastid	57.53	36.16
KXG23197	Sorghum	mitochondrion	30.5	21.88
KXG28232	Sorghum	mitochondrion	29.73	21.51
OQU92641	Sorghum	nucleus	27.8	20.63
EES06922	Sorghum	nucleus	25.48	20.43
EES08023	Sorghum	nucleus	25.48	19.41
EER99183	Sorghum	nucleus	28.96	19.13
EES12438	Sorghum	nucleus	27.41	18.78
EES15709	Sorghum	nucleus	24.71	18.34
OQU90478	Sorghum	nucleus	26.64	18.25
EES14151	Sorghum	nucleus	26.64	18.06
OQU92255	Sorghum	nucleus	20.85	17.7
KXG40277	Sorghum	nucleus	28.96	17.4
EES15257	Sorghum	nucleus	26.64	14.02
EER97061	Sorghum	nucleus	26.25	13.6
OQU89248	Sorghum	nucleus	11.58	12.45
OQU83493	Sorghum	nucleus	16.22	5.5
OQU83785	Sorghum	plastid	12.74	5.11

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8078318	UniProt:C5XZ10	ncoils:Coil	EnsemblPlants:EES04836
ProteinID:EES04836	ProteinID:EES04836.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045893	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301
PANTHER:PTHR13301:SF50	SMART:SM00338	EnsemblPlantsGene:SORBI_3004G107900	SUPFAM:SSF57959	unigene:Sbi.11701	UniParc:UPI0001A85235
RefSeq:XP_002451860.1	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:10369749..10372035

Molecular Weight (calculated)

27492.4 Da

IEP (calculated)

6.045

GRAVY (calculated)

-0.330

Length

259 amino acids

Sequence
(BLAST)

001: MAQLPPRAPS ALPQDHWSAA GAEFLGFAAA RRGAHRRSAS DSAAFLEVVP MDDVIGGGGS GSAGDDFDRL DDEQLMSMFS DVDAPAVSDG AGERAGDAAQ
101: LMDVGDAEDG MAASSPAGAR AAADGVADPK RVKRILANRQ SAQRSRVRKL QYISELERSV TSLQMEVSAL SPRVAFLDHQ RSLLTVGNSH LKQRIAALAQ
201: DKIFKDAHQE ALKKEIERLR QVYQQQQIKV ATTGGADIAA AASMQARQEL LACEGAAIR

Best Arabidopsis Sequence Match ( AT2G42380.2 )
(BLAST)

001: MAQLPPKIPN MTQHWPDFSS QKLSPFSTPT ATAVATATTT VQNPSWVDEF LDFSASRRGN HRRSISDSIA FLEAPTVSIE DHQFDRFDDE QFMSMFTDDD
101: NLHSNPSHIN NKNNNVGPTG SSSNTSTPSN SFNDDNKELP PSDHNMNNNI NNNYNDEVQS QCKMEPEDGT ASNNNSGDSS GNRILDPKRV KRILANRQSA
201: QRSRVRKLQY ISELERSVTS LQAEVSVLSP RVAFLDHQRL LLNVDNSALK QRIAALSQDK LFKDAHQEAL KREIERLRQV YNQQSLTNVE NANHLSATGA
301: GATPAVDIKS SVETEQLLNV S

Arabidopsis Description

BZIP34Basic leucine zipper 34 [Source:UniProtKB/Swiss-Prot;Acc:F4IN23]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.