CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022442_P001	Maize	nucleus	93.39	94.39
Zm00001d007172_P001	Maize	plastid	87.04	90.88
TraesCS2D01G105400.1	Wheat	nucleus	76.19	78.26
TraesCS2A01G105700.1	Wheat	nucleus, plastid	75.66	77.72
TraesCS2B01G122700.1	Wheat	nucleus	75.4	77.03
OQU92641	Sorghum	nucleus	65.08	70.49
GSMUA_Achr2P18830_001	Banana	nucleus	50.53	66.32
HORVU2Hr1G017820.1	Barley	nucleus	56.35	58.2
GSMUA_Achr6P32530_001	Banana	nucleus	47.09	55.8
Bra000195.1-P	Field mustard	nucleus	35.71	40.42
EES08023	Sorghum	nucleus	32.8	36.47
EES15709	Sorghum	nucleus	32.28	34.96
EER99183	Sorghum	nucleus	34.92	33.67
EES12438	Sorghum	nucleus	33.07	33.07
OQU92255	Sorghum	nucleus	26.19	32.46
EES14151	Sorghum	nucleus	30.95	30.63
CDY13830	Canola	nucleus, plastid	23.81	29.32
EES01493	Sorghum	nucleus	20.37	27.9
KXG40277	Sorghum	nucleus	31.48	27.61
EES15257	Sorghum	nucleus	35.19	27.03
EES04836	Sorghum	nucleus	18.25	26.64
KRH35159	Soybean	nucleus	20.63	24.61
EER97061	Sorghum	nucleus	28.57	21.6
OQU89248	Sorghum	nucleus	12.96	20.33
EES00074	Sorghum	nucleus, plastid	19.84	18.2
KXG23197	Sorghum	mitochondrion	16.14	16.9
KXG28232	Sorghum	mitochondrion	15.87	16.76
EES06922	Sorghum	nucleus	14.02	16.41
CDY13829	Canola	cytosol	0.26	9.09
OQU83785	Sorghum	plastid	15.34	8.98
OQU83493	Sorghum	nucleus	17.2	8.51

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8074450	UniProt:A0A1W0W7V1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EnsemblPlants:OQU90478
ProteinID:OQU90478	ProteinID:OQU90478.1	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF84
SMART:SM00338	EnsemblPlantsGene:SORBI_3002G418100	SUPFAM:SSF57959	UniParc:UPI0009DC83D7	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:76589058..76595423

Molecular Weight (calculated)

40645.1 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.592

Length

378 amino acids

Sequence
(BLAST)

001: MAMPPKPGDP PQRSPGRSPN LNLPCPLPPV PGGAPAPPPQ HQPGAGLPPP RVGHHRRARS EVAFRFPDDL AGAGAGGFDE IGSEDDLFST FMDMDKIAGA
101: DRDRAAETSS PPRPAKHRHS ASFDGFGMGA GAGGPGGQQD GGGGVFGEVM EAKKAMSSEQ LAELAAIDPK RAKRIIANRQ SAARSKERKA RYITELERKV
201: QTLQTEATTL SAQLTLFQRD TTGLSAENAE LKIRLQAMEQ QAQLRDALND ALKQEVERLK IATGEMSKSN EQFNMGMQHI SYSPSFFQLS EQHTVQQHGN
301: IQLPHHFQQP PPNVPSHQML SHPNSLSDMM QQDSLGRLQG LDIGKGSMAV KSEAEVVVKS EGSSISAGIF FIPFVISS

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.