CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043420_P001	Maize	nucleus	88.77	88.13
Zm00001d012719_P001	Maize	nucleus	86.96	85.71
Os01t0756200-01	Rice	nucleus	76.81	80.0
TraesCS3D01G293500.1	Wheat	nucleus	75.0	77.24
TraesCS3B01G328400.1	Wheat	nucleus	74.64	76.87
HORVU3Hr1G072770.1	Barley	nucleus	73.55	76.32
TraesCS3A01G293700.2	Wheat	nucleus	72.83	67.45
EES04836	Sorghum	nucleus	52.17	55.6
KRH27307	Soybean	plastid	51.09	49.47
KRH22014	Soybean	nucleus, plastid	56.16	48.44
VIT_19s0014g01780.t01	Wine grape	nucleus	53.99	48.22
PGSC0003DMT400032381	Potato	nucleus, plastid	49.28	47.06
Solyc07g062710.2.1	Tomato	nucleus, plastid	51.45	47.02
EES00074	Sorghum	nucleus, plastid	56.16	37.62
KXG23197	Sorghum	mitochondrion	29.71	22.71
KXG28232	Sorghum	mitochondrion	28.99	22.35
EES06922	Sorghum	nucleus	26.09	22.29
OQU92641	Sorghum	nucleus	27.9	22.06
OQU92255	Sorghum	nucleus	22.83	20.66
OQU90478	Sorghum	nucleus	27.9	20.37
EES08023	Sorghum	nucleus	25.0	20.29
EES12438	Sorghum	nucleus	27.54	20.11
EER99183	Sorghum	nucleus	28.26	19.9
EES15709	Sorghum	nucleus	25.0	19.77
EES14151	Sorghum	nucleus	27.17	19.63
KXG40277	Sorghum	nucleus	27.9	17.87
EER97061	Sorghum	nucleus	28.62	15.8
EES15257	Sorghum	nucleus	27.54	15.45
OQU89248	Sorghum	nucleus	12.32	14.11
OQU83493	Sorghum	nucleus	18.84	6.81
OQU83785	Sorghum	plastid	14.13	6.04

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8075600	UniProt:C5XK77	ncoils:Coil	EnsemblPlants:EES01493
ProteinID:EES01493	ProteinID:EES01493.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045893	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301
PANTHER:PTHR13301:SF48	SMART:SM00338	EnsemblPlantsGene:SORBI_3003G300100	SUPFAM:SSF57959	unigene:Sbi.3148	UniParc:UPI0001A84A21
RefSeq:XP_002456373.1	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:63114217..63117744

Molecular Weight (calculated)

29260.0 Da

IEP (calculated)

6.174

GRAVY (calculated)

-0.575

Length

276 amino acids

Sequence
(BLAST)

001: MAQLPPRIPT AVHHWPEGGQ HGAAAAWADD FAEFAASRRG AHRRSLSDSV AFVEVAPADG AAGEFDRLDD DQLMSMFPDE AAAGGGSSSA LGSENGGSSD
101: SDGDKRVGGT SAGGTIAGNG NACDGEQNEA GDAQAPATGQ AAAASTELIR DPKRVKRILA NRQSAQRSRV RKLQYISELE RSVTTLQNEV SVLSPRVAFL
201: DQQRTILTVG NSHLKQRIAA LAQDKIFKDA HQEALKKEIE RLRQVYEQQN LKMSAGAAAS DHGPPPPVRA EKELMS

Best Arabidopsis Sequence Match ( AT2G42380.2 )
(BLAST)

001: MAQLPPKIPN MTQHWPDFSS QKLSPFSTPT ATAVATATTT VQNPSWVDEF LDFSASRRGN HRRSISDSIA FLEAPTVSIE DHQFDRFDDE QFMSMFTDDD
101: NLHSNPSHIN NKNNNVGPTG SSSNTSTPSN SFNDDNKELP PSDHNMNNNI NNNYNDEVQS QCKMEPEDGT ASNNNSGDSS GNRILDPKRV KRILANRQSA
201: QRSRVRKLQY ISELERSVTS LQAEVSVLSP RVAFLDHQRL LLNVDNSALK QRIAALSQDK LFKDAHQEAL KREIERLRQV YNQQSLTNVE NANHLSATGA
301: GATPAVDIKS SVETEQLLNV S

Arabidopsis Description

BZIP34Basic leucine zipper 34 [Source:UniProtKB/Swiss-Prot;Acc:F4IN23]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.