Factsheet for VIT_19s0014g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	60.52	63.39
KRH27307	Soybean	plastid	57.93	62.81
KRH22014	Soybean	nucleus, plastid	64.4	62.19
GSMUA_Achr6P26930_001	Banana	nucleus	50.49	61.66
GSMUA_Achr9P06540_001	Banana	nucleus	48.54	61.48
PGSC0003DMT400032381	Potato	nucleus, plastid	56.31	60.21
GSMUA_Achr3P03550_001	Banana	nucleus	44.34	59.05
GSMUA_Achr3P31390_001	Banana	nucleus	42.39	58.74
GSMUA_Achr4P10560_001	Banana	nucleus	50.81	57.93
GSMUA_Achr7P25310_001	Banana	nucleus	51.46	57.61
Solyc07g062710.2.1	Tomato	nucleus, plastid	55.99	57.28
HORVU5Hr1G045690.1	Barley	nucleus	43.04	55.42
TraesCS5D01G148700.1	Wheat	nucleus	42.72	55.23
Zm00001d016154_P001	Maize	nucleus	44.98	55.16
Os01t0756200-01	Rice	nucleus	47.25	55.09
TraesCS5B01G142200.1	Wheat	nucleus	42.39	54.81
TraesCS5A01G143300.1	Wheat	nucleus	42.07	54.39
EES01493	Sorghum	nucleus	48.22	53.99
Zm00001d039383_P001	Maize	nucleus	50.16	53.82
HORVU3Hr1G072770.1	Barley	nucleus	46.28	53.76
TraesCS3B01G328400.1	Wheat	nucleus	46.6	53.73
TraesCS3D01G293500.1	Wheat	nucleus	46.6	53.73
EES04836	Sorghum	nucleus	44.66	53.28
TraesCS2D01G144300.1	Wheat	nucleus	52.75	53.27
TraesCS3D01G148200.1	Wheat	nucleus	52.43	53.11
Zm00001d043420_P001	Maize	nucleus	47.25	52.52
TraesCS3B01G167500.1	Wheat	nucleus	49.51	52.4
Zm00001d053442_P001	Maize	nucleus	43.69	52.33
TraesCS2A01G140900.1	Wheat	nucleus	51.13	51.63
TraesCS2B01G165700.1	Wheat	nucleus	50.49	50.81
Zm00001d012719_P001	Maize	nucleus	45.63	50.36
TraesCS3A01G293700.2	Wheat	nucleus	46.28	47.99
HORVU3Hr1G040920.8	Barley	nucleus	47.25	46.65
Os01t0211800-01	Rice	extracellular, nucleus	48.54	45.45
TraesCS3A01G131900.1	Wheat	nucleus	45.95	44.65
EES00074	Sorghum	nucleus, plastid	53.72	40.29
VIT_18s0001g13740.t01	Wine grape	nucleus	15.86	37.12
VIT_18s0001g03010.t01	Wine grape	nucleus	23.62	26.84
VIT_12s0035g00620.t01	Wine grape	nucleus	28.8	23.8
VIT_13s0073g00430.t01	Wine grape	nucleus	23.62	23.7
VIT_06s0004g08070.t01	Wine grape	plastid	22.33	20.18
VIT_18s0076g00330.t01	Wine grape	nucleus	22.33	19.71
VIT_13s0067g02900.t01	Wine grape	nucleus	22.65	19.5
VIT_05s0102g01120.t01	Wine grape	nucleus	23.62	17.18
VIT_03s0038g00860.t01	Wine grape	nucleus	26.54	12.13

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100258873	wikigene:100258873	MapMan:15.5.4.1	EMBL:AM436142	ProteinID:CAN71664
ProteinID:CAN71664.1	ProteinID:CBI20226	ProteinID:CBI20226.3	ncoils:Coil	UniProt:E0CSC7	EMBL:FN595229
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045893	InterPro:IPR004827
EntrezGene:LOC100258873	wikigene:LOC100258873	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301
PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959	TIGR:TC57157	UniParc:UPI0001BE1BC2	ArrayExpress:VIT_19s0014g01780
EnsemblPlantsGene:VIT_19s0014g01780	EnsemblPlants:VIT_19s0014g01780.t01	unigene:Vvi.12385	RefSeq:XP_002285311	RefSeq:XP_002285311.2	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:1945207..1947498

Molecular Weight (calculated)

34065.8 Da

IEP (calculated)

7.370

GRAVY (calculated)

-0.695

Length

309 amino acids

Sequence
(BLAST)

001: MTQNWPSFPH QRMPSMAAPA LLPAATATTT SQHPSWVDEF LDFSSSRRGS HRRSVSDSIA FLEAPVLVEE ARHSHATMLH GANGFDRLDD DQLMSMFSDD
101: ISLTVPPTVS SSGPSTPSDQ NSNNDEKGDE KGAALDQQPP KNEPGEVESS CKTELPSFRP STASNGDSII DPKRVKRILA NRQSAQRSRV RKLQYISELE
201: RSVTSLQTEV SALSPRVAFL DHQRLILNVD NSALKQRIAA LAQDKIFKDA HQEALKKEIE RLRQVYHQQS LKKMGNSATG APPQSTTRPH QTTTTDAAMG
301: CTDKVQLLN

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.