Factsheet for VIT_12s0035g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59143	Soybean	nucleus	70.86	70.67
KRH43037	Soybean	nucleus	70.05	69.68
PGSC0003DMT400064169	Potato	nucleus	63.1	64.66
Bra035464.1-P	Field mustard	nucleus	29.95	63.64
GSMUA_Achr8P29390_001	Banana	nucleus	54.55	55.74
VIT_18s0001g03010.t01	Wine grape	nucleus	40.11	55.15
CDY23807	Canola	nucleus	48.93	54.46
CDY46864	Canola	nucleus	48.13	53.89
Solyc10g044830.1.1	Tomato	nucleus	35.56	53.85
AT1G58110.2	Thale cress	nucleus	53.74	53.74
Bra027885.1-P	Field mustard	nucleus	53.48	53.62
CDY29162	Canola	nucleus	53.21	53.21
CDY39913	Canola	nucleus	52.67	53.1
Zm00001d041831_P001	Maize	mitochondrion	48.66	52.3
TraesCS4B01G108000.1	Wheat	nucleus	48.13	52.02
TraesCS4A01G204300.1	Wheat	nucleus	48.13	52.02
KXG28232	Sorghum	mitochondrion	49.73	51.96
GSMUA_Achr9P00300_001	Banana	nucleus	52.14	51.86
TraesCS4D01G105100.1	Wheat	mitochondrion	47.86	51.73
KXG23197	Sorghum	mitochondrion	49.73	51.52
Os11t0218000-01	Rice	nucleus	50.0	51.37
Zm00001d049135_P001	Maize	mitochondrion	47.59	51.0
Os12t0194600-01	Rice	nucleus	49.47	50.14
HORVU5Hr1G031130.2	Barley	mitochondrion	45.45	47.22
AT4G06598.1	Thale cress	nucleus	33.42	47.17
HORVU4Hr1G016340.4	Barley	nucleus, plastid	48.93	44.42
GSMUA_Achr3P02820_001	Banana	golgi	47.59	44.39
Zm00001d035240_P001	Maize	nucleus	21.93	36.28
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	24.06	30.51
VIT_19s0014g01780.t01	Wine grape	nucleus	23.8	28.8
VIT_18s0001g13740.t01	Wine grape	nucleus	9.89	28.03
VIT_13s0073g00430.t01	Wine grape	nucleus	22.19	26.95
VIT_06s0004g08070.t01	Wine grape	plastid	17.11	18.71
VIT_13s0067g02900.t01	Wine grape	nucleus	17.38	18.11
VIT_18s0076g00330.t01	Wine grape	nucleus	16.58	17.71
VIT_05s0102g01120.t01	Wine grape	nucleus	19.79	17.41
VIT_03s0038g00860.t01	Wine grape	nucleus	24.33	13.46

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100257570	wikigene:100257570	MapMan:15.5.4.1	UniProt:A5B6S2	EMBL:AM448620
ProteinID:CAN61016	ProteinID:CAN61016.1	ProteinID:CBI29737	ProteinID:CBI29737.3	ncoils:Coil	EMBL:FN595990
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045893	InterPro:IPR004827
EntrezGene:LOC100257570	wikigene:LOC100257570	PANTHER:PTHR13301	PANTHER:PTHR13301:SF25	SMART:SM00338	SUPFAM:SSF57959
TIGR:TC62727	UniParc:UPI000152028D	ArrayExpress:VIT_12s0035g00620	EnsemblPlantsGene:VIT_12s0035g00620	EnsemblPlants:VIT_12s0035g00620.t01	unigene:Vvi.3511
RefSeq:XP_002266061	RefSeq:XP_002266061.1	RefSeq:XP_010658028.1	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:20038502..20045379

Molecular Weight (calculated)

41908.3 Da

IEP (calculated)

8.251

GRAVY (calculated)

-0.956

Length

374 amino acids

Sequence
(BLAST)

001: MANSKGSSNF RNMISSGKHS LLPPKSPFPS ISPSYADYAP SPAIGSKVIA RPREGGNTHH QRTSSEGFLI EEQPSWLDDL LNEPETPVRR GHRRSSSDSF
101: AYMDATNVSN IDHTAQDELK FRNLISATSW GSQDFEHYKD ARNASFYVEP NSFGRQKNRT SMTYSSGLPS TRDSNVLQSS GSSCIPHETD GVSSTATEKQ
201: DLVESSLHDP KASSERRDCS HAKPSASETD TKRAKQQFAQ RSRVRKLQYI AELERNVQAL KAEGSEVSAE LDFLNQQNLI LSMENKALKQ RLESLAQEQL
301: IKYLEQEVLE REIGRLRSLY HQQQQQQQQP QQQQPASSHR RSSSRDLDAQ FANLSLKHKD NSSGTDAVTG PLRI

Best Arabidopsis Sequence Match ( AT1G58110.1 )
(BLAST)

001: MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYSEYIP TGLIGSRHGQ KLSNEKTHHQ RTSSESHLVE ELPFWLDDLL NEQPESPARK CGHRRSSSDS
101: YAYLDVANAT NISLTLQNDF SYRNTVLSTQ RGVQELDRNK NAQDAAFYSG ASFLKQKSRQ RDSLVATGAC PSWLPFAREN GGGKNLGALY MSQDATVISS
201: ERKNYAEPFS HDPKMLSSEE NNSNPSPVTY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ RNLILSMENK ALKKRLESIA
301: QEKLIKQLEQ EVLEKEIGRL RALYQQQQQT QKPSASRGRA TSKDLDSQFS SLSLNTKDSN CRRDSVSVMG QFHF

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4I9R1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.