Factsheet for VIT_06s0004g08070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17183	Soybean	plastid	70.47	66.57
KRH72827	Soybean	plastid	70.76	66.48
KRG98137	Soybean	nucleus	72.51	65.26
CDY35020	Canola	nucleus	32.75	63.64
KRH30482	Soybean	nucleus	71.34	63.38
VIT_13s0067g02900.t01	Wine grape	nucleus	65.2	62.12
VIT_18s0001g13740.t01	Wine grape	nucleus	22.51	58.33
CDX86512	Canola	nucleus	53.51	57.55
CDY15590	Canola	nucleus	53.8	57.32
Bra030663.1-P	Field mustard	nucleus	53.51	57.19
Bra031541.1-P	Field mustard	nucleus	54.09	57.1
CDY06231	Canola	nucleus	54.09	56.92
CDY09952	Canola	nucleus	54.39	56.71
AT1G06850.1	Thale cress	nucleus	54.39	55.19
VIT_18s0076g00330.t01	Wine grape	nucleus	39.77	38.86
VIT_05s0102g01120.t01	Wine grape	nucleus	41.81	33.65
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	20.47	23.73
VIT_19s0014g01780.t01	Wine grape	nucleus	20.18	22.33
VIT_03s0038g00860.t01	Wine grape	nucleus	40.06	20.27
VIT_18s0001g03010.t01	Wine grape	nucleus	15.2	19.12
VIT_12s0035g00620.t01	Wine grape	nucleus	18.71	17.11
VIT_13s0073g00430.t01	Wine grape	nucleus	14.33	15.91

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100243248	wikigene:100243248	MapMan:15.5.4.1	EMBL:AM441534	ProteinID:CAN65087
ProteinID:CAN65087.1	ProteinID:CCB43403	ProteinID:CCB43403.1	ncoils:Coil	UniProt:F6GUB6	EMBL:FN594951
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EntrezGene:LOC100243248	wikigene:LOC100243248	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690
PANTHER:PTHR13690:SF82	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000210A8D6	ArrayExpress:VIT_06s0004g08070	EnsemblPlantsGene:VIT_06s0004g08070
EnsemblPlants:VIT_06s0004g08070.t01	unigene:Vvi.22367	RefSeq:XP_002266792	RefSeq:XP_002266792.1	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr6:-:8835674..8841051

Molecular Weight (calculated)

37582.0 Da

IEP (calculated)

6.188

GRAVY (calculated)

-0.703

Length

342 amino acids

Sequence
(BLAST)

001: MQDPSSSHNA PKNSTPATMY GNPATSFRGP HHRRAHSELT FRMPDDVDLS SSDPFNASAA SLEEIASEDD LFSTYIDVDK LGAGGNGADQ SGEAEKSVKP
101: RHRHSNSVDC SSSKGEEGVF GEIMDAKKAM PPDKLAELWN IDPKRAKRIL ANRQSAARSK ERKARYILEL ERKVQTLQTE ATTLSAQLTL YQRDTTGLST
201: ENTELKLRLQ AMEQQAQLRD ALNTALKQEV ERLKIATGEI MSPSESFDLG MQQMLYTPSS FLSLPQQIGP AGQPNMQLPP FHHSHSNMST QYLQPINSQP
301: ISEILQNDPL GRLQGLDISS RGSHLVKSEG PSISACESSS TF

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.