Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031541.1-P | Field mustard | nucleus | 97.26 | 98.46 |
| CDY06231 | Canola | nucleus | 96.95 | 97.85 |
| CDX86512 | Canola | nucleus | 87.2 | 89.94 |
| CDY15590 | Canola | nucleus | 87.2 | 89.1 |
| AT1G06850.1 | Thale cress | nucleus | 84.76 | 82.49 |
| CDY35020 | Canola | nucleus | 43.9 | 81.82 |
| VIT_06s0004g08070.t01 | Wine grape | plastid | 56.71 | 54.39 |
| KRH17183 | Soybean | plastid | 57.32 | 51.93 |
| KRH72827 | Soybean | plastid | 57.62 | 51.92 |
| KRG98137 | Soybean | nucleus | 56.4 | 48.68 |
| KRH30482 | Soybean | nucleus | 56.71 | 48.31 |
| CDX93167 | Canola | nucleus | 49.39 | 47.23 |
| CDY06974 | Canola | nucleus | 49.7 | 46.31 |
| CDY23889 | Canola | nucleus | 50.0 | 46.2 |
| CDX79976 | Canola | nucleus | 49.7 | 45.79 |
| CDY24896 | Canola | nucleus | 44.82 | 43.36 |
| CDY07597 | Canola | nucleus | 40.55 | 39.82 |
| CDY48943 | Canola | nucleus | 28.05 | 38.17 |
| CDY19094 | Canola | nucleus | 33.23 | 34.28 |
| CDY56611 | Canola | nucleus | 38.41 | 34.24 |
| CDY10799 | Canola | nucleus | 38.41 | 33.96 |
| CDY15381 | Canola | nucleus | 36.89 | 32.7 |
| CDY15560 | Canola | nucleus | 37.8 | 32.55 |
| CDX80722 | Canola | nucleus | 31.71 | 32.3 |
| CDY10170 | Canola | nucleus | 38.41 | 32.06 |
| CDY30752 | Canola | nucleus | 32.01 | 31.82 |
| CDY47713 | Canola | nucleus | 37.5 | 31.38 |
| CDX86537 | Canola | nucleus | 37.5 | 31.3 |
| CDY13830 | Canola | nucleus, plastid | 26.52 | 28.34 |
| CDY71925 | Canola | nucleus | 21.65 | 27.95 |
| CDY22561 | Canola | nucleus, plastid | 21.04 | 25.75 |
| CDX71974 | Canola | nucleus, plastid | 20.12 | 24.72 |
| CDY35379 | Canola | nucleus, plastid | 20.12 | 24.63 |
| CDY12108 | Canola | nucleus | 31.71 | 24.41 |
| CDX72732 | Canola | nucleus | 32.62 | 24.26 |
| CDX82008 | Canola | nucleus | 27.44 | 24.19 |
| CDY56238 | Canola | extracellular | 9.76 | 23.88 |
| CDY15909 | Canola | plastid | 32.32 | 23.87 |
| CDY22407 | Canola | nucleus | 32.32 | 23.82 |
| CDX99610 | Canola | nucleus | 32.01 | 23.76 |
| CDX71000 | Canola | nucleus, plastid | 20.12 | 23.66 |
| CDX79872 | Canola | nucleus, plastid | 20.12 | 23.57 |
| CDY64520 | Canola | nucleus, plastid | 19.51 | 23.44 |
| CDY06053 | Canola | nucleus | 20.12 | 23.24 |
| CDX90298 | Canola | nucleus | 30.79 | 23.06 |
| CDX98266 | Canola | nucleus, plastid | 20.12 | 22.15 |
| CDY46864 | Canola | nucleus | 17.38 | 17.07 |
| CDY23807 | Canola | nucleus | 17.38 | 16.96 |
| CDY39913 | Canola | nucleus | 18.9 | 16.71 |
| CDY29162 | Canola | nucleus | 18.9 | 16.58 |
| CDX82009 | Canola | plastid | 18.9 | 16.19 |
| CDY70502 | Canola | nucleus | 18.9 | 16.06 |
| CDY48939 | Canola | nucleus | 14.63 | 15.53 |
| CDY13828 | Canola | plastid | 17.99 | 15.25 |
| CDX80717 | Canola | nucleus, plastid | 14.63 | 15.0 |
| CDY44883 | Canola | mitochondrion, nucleus | 12.5 | 13.4 |
| CDX70198 | Canola | mitochondrion, nucleus | 12.5 | 13.36 |
| CDY13829 | Canola | cytosol | 0.3 | 9.09 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078FA86 | UniProt:A0A078FA86 | EnsemblPlants:CDY09952 | ProteinID:CDY09952 |
| ProteinID:CDY09952.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00031724001 | InterPro:IPR004827 | PFAM:PF00170 | PFscan:PS50217 | PANTHER:PTHR13690 |
| PANTHER:PTHR13690:SF82 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EBBC90 | InterPro:bZIP | SEG:seg |
Description
BnaC08g44990DBnaC08g44990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA86]
Coordinates
chrLK032000:-:222772..224496
Molecular Weight (calculated)
36177.0 Da
IEP (calculated)
5.835
GRAVY (calculated)
-0.791
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSDPQPPN ADQIPSSFHR RSRSDDMSMF MFMDPLSSSG PPPSSDDLPS DDDLFSSFID VDSLSSNPHP TTTAFPNHAA AAAAASNSVP SSSSRPRHRH
101: SNSVDAGCAM YANEIMDAKK AMPPEKLSEL WNVDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQSLQ TEATTLSAQL TLFQRDTNGL ANENTELKLR
201: LQAMEQQAHL RNALNEALRK ELERMKIETG EISGNSDSFD MGMQQVQYSP STFMAIPPYH HGSINNGQDM QQMHGYNPME AMSNSQSVSE FLQNGRLQGL
301: EISSNNNSSS LVKSEGPSLS ASESSSAY
101: SNSVDAGCAM YANEIMDAKK AMPPEKLSEL WNVDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQSLQ TEATTLSAQL TLFQRDTNGL ANENTELKLR
201: LQAMEQQAHL RNALNEALRK ELERMKIETG EISGNSDSFD MGMQQVQYSP STFMAIPPYH HGSINNGQDM QQMHGYNPME AMSNSQSVSE FLQNGRLQGL
301: EISSNNNSSS LVKSEGPSLS ASESSSAY
001: MEKSDPPPVP KPGATIIPSS DPIPNADPIP SSSFHRRSRS DDMSMFMFMD PLSSAAPPSS DDLPSDDDLF SSFIDVDSLT SNPNPFQNPS LSSNSVSGAA
101: NPPPPPSSRP RHRHSNSVDA GCAMYAGDIM DAKKAMPPEK LSELWNIDPK RAKRILANRQ SAARSKERKA RYIQELERKV QSLQTEATTL SAQLTLYQRD
201: TNGLANENTE LKLRLQAMEQ QAQLRNALNE ALRKEVERMK METGEISGNS DSFDMGMQQI QYSSSTFMAI PPYHGSMNLH DMQMHSSFNP MEMSNSQSVS
301: DFLQNGRMQG LEISSNSSSL VKSEGPSLSA SESSSAY
101: NPPPPPSSRP RHRHSNSVDA GCAMYAGDIM DAKKAMPPEK LSELWNIDPK RAKRILANRQ SAARSKERKA RYIQELERKV QSLQTEATTL SAQLTLYQRD
201: TNGLANENTE LKLRLQAMEQ QAQLRNALNE ALRKEVERMK METGEISGNS DSFDMGMQQI QYSSSTFMAI PPYHGSMNLH DMQMHSSFNP MEMSNSQSVS
301: DFLQNGRMQG LEISSNSSSL VKSEGPSLSA SESSSAY
Arabidopsis Description
AtbZIP52AtbZIP transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8VWG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.