Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43700.1 | CDX80722 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | CDY30752 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | CDY48943 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | CDY71925 | AT1G43700.1 | 15824315 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48943 | Canola | nucleus | 72.36 | 96.68 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 77.33 | 94.68 |
| CDY30752 | Canola | nucleus | 88.82 | 86.67 |
| CDY71925 | Canola | nucleus | 66.46 | 84.25 |
| AT1G43700.1 | Thale cress | nucleus | 79.5 | 75.07 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 44.1 | 54.41 |
| Solyc06g060490.2.1 | Tomato | nucleus | 45.65 | 53.07 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 43.17 | 49.64 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 30.12 | 48.5 |
| Solyc04g071160.2.1 | Tomato | nucleus | 51.24 | 48.39 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 52.48 | 48.29 |
| PGSC0003DMT400002100 | Potato | nucleus | 50.93 | 48.24 |
| PGSC0003DMT400045314 | Potato | nucleus | 48.45 | 47.85 |
| KRH70316 | Soybean | nucleus | 48.76 | 47.58 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 45.65 | 45.51 |
| Os11t0160500-01 | Rice | nucleus, plasma membrane | 33.23 | 45.34 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 45.96 | 44.98 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 45.65 | 44.55 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 45.65 | 44.41 |
| Zm00001d041920_P001 | Maize | nucleus | 44.1 | 44.24 |
| EES08023 | Sorghum | nucleus | 46.58 | 44.12 |
| Zm00001d053162_P003 | Maize | nucleus | 45.96 | 43.79 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 45.03 | 43.67 |
| TraesCS5A01G124600.1 | Wheat | nucleus | 45.03 | 43.67 |
| GSMUA_Achr10P... | Banana | nucleus | 41.61 | 42.81 |
| Os12t0162500-01 | Rice | plasma membrane | 43.48 | 42.68 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 38.82 | 42.66 |
| Zm00001d004857_P001 | Maize | nucleus | 45.34 | 41.71 |
| EES15709 | Sorghum | nucleus | 45.03 | 41.55 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 35.71 | 40.49 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 44.1 | 39.78 |
| GSMUA_Achr10P... | Banana | nucleus | 40.37 | 38.69 |
| CDY35020 | Canola | nucleus | 20.81 | 38.07 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 44.72 | 36.18 |
| CDY19094 | Canola | nucleus | 35.4 | 35.85 |
| KRH08713 | Soybean | nucleus | 45.96 | 34.74 |
| CDY15590 | Canola | nucleus | 32.3 | 32.4 |
| CDX86512 | Canola | nucleus | 31.99 | 32.39 |
| CDY56611 | Canola | nucleus | 36.65 | 32.07 |
| CDY06231 | Canola | nucleus | 32.3 | 32.0 |
| CDY09952 | Canola | nucleus | 32.3 | 31.71 |
| CDY10799 | Canola | nucleus | 36.34 | 31.54 |
| CDY15381 | Canola | nucleus | 35.71 | 31.08 |
| CDX93167 | Canola | nucleus | 31.99 | 30.03 |
| CDY15560 | Canola | nucleus | 35.4 | 29.92 |
| CDX86537 | Canola | nucleus | 36.34 | 29.77 |
| CDY10170 | Canola | nucleus | 36.02 | 29.52 |
| CDY06974 | Canola | nucleus | 31.99 | 29.26 |
| CDY47713 | Canola | nucleus | 35.4 | 29.08 |
| CDY23889 | Canola | nucleus | 31.99 | 29.01 |
| CDX79976 | Canola | nucleus | 31.68 | 28.65 |
| CDY24896 | Canola | nucleus | 27.02 | 25.66 |
| CDY13830 | Canola | nucleus, plastid | 24.22 | 25.41 |
| CDX72732 | Canola | nucleus | 33.85 | 24.72 |
| CDY12108 | Canola | nucleus | 32.3 | 24.41 |
| CDY22407 | Canola | nucleus | 32.92 | 23.82 |
| CDY64520 | Canola | nucleus, plastid | 19.88 | 23.44 |
| CDX71974 | Canola | nucleus, plastid | 19.25 | 23.22 |
| CDX90298 | Canola | nucleus | 31.37 | 23.06 |
| CDY07597 | Canola | nucleus | 23.91 | 23.05 |
| CDX71000 | Canola | nucleus, plastid | 19.88 | 22.94 |
| CDX79872 | Canola | nucleus, plastid | 19.88 | 22.86 |
| CDY22561 | Canola | nucleus, plastid | 18.63 | 22.39 |
| CDY15909 | Canola | plastid | 30.75 | 22.3 |
| CDY06053 | Canola | nucleus | 19.57 | 22.18 |
| CDY35379 | Canola | nucleus, plastid | 18.32 | 22.01 |
| CDX99610 | Canola | nucleus | 30.12 | 21.95 |
| CDX82008 | Canola | nucleus | 24.53 | 21.24 |
| CDY56238 | Canola | extracellular | 8.7 | 20.9 |
| CDX98266 | Canola | nucleus, plastid | 19.25 | 20.81 |
| CDY46864 | Canola | nucleus | 19.25 | 18.56 |
| CDY23807 | Canola | nucleus | 19.25 | 18.45 |
| CDY39913 | Canola | nucleus | 18.94 | 16.44 |
| CDY29162 | Canola | nucleus | 18.94 | 16.31 |
| CDY13828 | Canola | plastid | 18.94 | 15.76 |
| CDX82009 | Canola | plastid | 18.63 | 15.67 |
| CDY70502 | Canola | nucleus | 18.63 | 15.54 |
| CDY48939 | Canola | nucleus | 14.6 | 15.21 |
| CDX80717 | Canola | nucleus, plastid | 14.6 | 14.69 |
| CDY44883 | Canola | mitochondrion, nucleus | 11.8 | 12.42 |
| CDX70198 | Canola | mitochondrion, nucleus | 11.8 | 12.38 |
| CDY13829 | Canola | cytosol | 0.31 | 9.09 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078CVE0 | EnsemblPlants:CDX80722 | ProteinID:CDX80722 | ProteinID:CDX80722.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00134005001 | InterPro:IPR004827 | PFAM:PF00170 |
| PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EC84E4 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
BnaC08g05560D
Coordinates
chrLK031822:+:1173636..1175426
Molecular Weight (calculated)
35900.0 Da
IEP (calculated)
7.371
GRAVY (calculated)
-0.808
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPTLRANQS SILSEIERMP EAPRQRISHH RRARSDTFFT GESIDDLLLF DPSDVDFSSL DLLNAPAPQP SLMYVDSPPE ETSSNGAPQI HLPPGRHVRS
101: FSVDSDSDFF DDLTATEDNQ FARATSSGER KGHHHHHRSN SMDGATSSGS FNMEAILAAV NCKDGGKKNM SMASDRLAEL ALLDPKRAKR ILANRQSAAR
201: SKERKVRYTG ELERKVQTLQ NEATTLSAQV TLLQRGTSDL TTENKHLKMR LQALQQQAEL RDALNEALRE ELNRLKMAAG EIPQGKGNSY NCTQFLTQFG
301: NNKNQQMSTN GQPSFLDFTK RG
101: FSVDSDSDFF DDLTATEDNQ FARATSSGER KGHHHHHRSN SMDGATSSGS FNMEAILAAV NCKDGGKKNM SMASDRLAEL ALLDPKRAKR ILANRQSAAR
201: SKERKVRYTG ELERKVQTLQ NEATTLSAQV TLLQRGTSDL TTENKHLKMR LQALQQQAEL RDALNEALRE ELNRLKMAAG EIPQGKGNSY NCTQFLTQFG
301: NNKNQQMSTN GQPSFLDFTK RG
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.