Factsheet for Zm00001d023507_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004857_P001
Zm00001d023507_P001
Zm00001d041920_P001
Zm00001d053162_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	Zm00001d004857_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d023507_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d041920_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d053162_P003	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041920_P001	Maize	nucleus	69.85	86.6
EES15709	Sorghum	nucleus	75.63	86.25
Os12t0162500-01	Rice	plasma membrane	66.58	80.79
Zm00001d053162_P003	Maize	nucleus	63.32	74.56
Os11t0160500-01	Rice	nucleus, plasma membrane	43.22	72.88
Zm00001d004857_P001	Maize	nucleus	62.06	70.57
GSMUA_Achr3P19170_001	Banana	nucleus	34.92	69.5
GSMUA_Achr6P18130_001	Banana	nucleus	46.73	63.48
GSMUA_Achr10P...	Banana	nucleus	48.24	61.34
GSMUA_Achr6P13040_001	Banana	nucleus	41.21	57.75
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	36.18	55.17
Solyc06g060490.2.1	Tomato	nucleus	37.69	54.15
GSMUA_Achr10P...	Banana	nucleus	44.97	53.27
PGSC0003DMT400045314	Potato	nucleus	41.46	50.61
VIT_18s0076g00330.t01	Wine grape	nucleus	44.47	50.57
CDY48943	Canola	nucleus	30.15	49.79
PGSC0003DMT400002100	Potato	nucleus	41.71	48.82
Solyc04g071160.2.1	Tomato	nucleus	41.71	48.68
Bra034916.1-P	Field mustard	nucleus, plastid	31.16	47.15
KRH70316	Soybean	nucleus	38.94	46.97
Bra032191.1-P	Field mustard	nucleus	38.44	46.36
CDY30752	Canola	nucleus	38.19	46.06
CDX80722	Canola	nucleus	36.18	44.72
AT1G43700.1	Thale cress	nucleus	37.69	43.99
CDY71925	Canola	nucleus	27.64	43.31
KRH08713	Soybean	nucleus	40.45	37.79
Zm00001d021189_P001	Maize	nucleus	33.42	35.95
Zm00001d006127_P003	Maize	nucleus	32.66	35.04
Zm00001d029064_P001	Maize	nucleus	29.9	34.39
Zm00001d047519_P001	Maize	nucleus	29.9	33.71
Zm00001d007172_P001	Maize	plastid	30.4	33.43
Zm00001d003180_P001	Maize	nucleus	30.65	33.06
Zm00001d022442_P001	Maize	nucleus	30.65	32.62
Zm00001d052717_P001	Maize	nucleus	29.9	31.07
Zm00001d048455_P001	Maize	nucleus	25.63	30.27
Zm00001d031697_P001	Maize	nucleus	17.84	28.51
Zm00001d029711_P001	Maize	nucleus	28.39	28.46
Zm00001d027461_P001	Maize	plastid	28.14	26.29
Zm00001d016154_P001	Maize	nucleus	16.08	25.4
Zm00001d031723_P002	Maize	nucleus	28.89	24.73
Zm00001d052725_P001	Maize	nucleus	28.64	24.46
Zm00001d043420_P001	Maize	nucleus	16.83	24.1
Zm00001d053442_P001	Maize	nucleus	15.58	24.03
Zm00001d012719_P001	Maize	nucleus	16.58	23.57
Zm00001d039383_P001	Maize	nucleus	16.08	22.22
Zm00001d021191_P001	Maize	plastid	24.12	21.05
Zm00001d006157_P001	Maize	nucleus	23.37	19.42
Zm00001d035240_P001	Maize	nucleus	10.8	19.03
Zm00001d041831_P001	Maize	mitochondrion	15.83	18.1
Zm00001d049135_P001	Maize	mitochondrion	15.33	17.48
Zm00001d016732_P003	Maize	nucleus	10.55	13.12
Zm00001d050669_P001	Maize	nucleus	9.8	12.11
Zm00001d007364_P001	Maize	nucleus	16.08	10.05

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ProteinID:AQK39436.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K7TX82	PFAM:PF00170
PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002216EB6
EnsemblPlantsGene:Zm00001d023507	EnsemblPlants:Zm00001d023507_P001	EnsemblPlants:Zm00001d023507_T001	InterPro:bZIP	SEG:seg	:

Description

bZIP-transcription factor 10Transcription factor VIP1

Coordinates

chr10:+:7855627..7859481

Molecular Weight (calculated)

42997.0 Da

IEP (calculated)

7.264

GRAVY (calculated)

-0.813

Length

398 amino acids

Sequence
(BLAST)

001: MYDTHHPHRT HPPTRPSAAH THTHTHTHTL HASETTRRTA ASRPPPPRPG ACELALASLP APTEMDPRFP LPAAAAPSTG GGGGARGHHR RAHSETFLSF
101: HDADLLLDPD GDFFSDLDFP SLSDDSPAAS DPTPPPHPQQ QPPQASPAPR PPGGTHTRSL SLDAAFFEGL AFQGPSGSAG GGGGPGHKRS GSMDGDTSPF
201: EGESALSSGL PDYAKKAMPA ERIAELALID PKRAKRILAN RQSAARSKER KIMYTSELEK KVQTLQTEAT TLSAQLTLLQ RDTTGLTAEN RELKLRLQSM
301: EEQAKLRDAL NEALREEVQR LKIAAGQVGN MNGNPFNGGL QQQIPSYFVQ QQQQQQTPYF GGHQAQLHNQ NQNHRHQISS NVGQTLSGQS LNDSMDFM

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.