Factsheet for Os12t0162500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0160500-01
Os12t0162500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	Os11t0160500-01	AT1G43700.1	15824315
AT1G43700.1	Os12t0162500-01	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15709	Sorghum	nucleus	85.37	80.23
Zm00001d041920_P001	Maize	nucleus	77.44	79.13
Os11t0160500-01	Rice	nucleus, plasma membrane	52.74	73.31
GSMUA_Achr3P19170_001	Banana	nucleus	44.21	72.5
Zm00001d023507_P001	Maize	nucleus, plastid	80.79	66.58
GSMUA_Achr6P18130_001	Banana	nucleus	59.45	66.55
GSMUA_Achr10P...	Banana	nucleus	60.98	63.9
GSMUA_Achr6P13040_001	Banana	nucleus	51.52	59.51
Solyc06g060490.2.1	Tomato	nucleus	46.04	54.51
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	42.99	54.02
GSMUA_Achr10P...	Banana	nucleus	54.27	52.98
PGSC0003DMT400045314	Potato	nucleus	50.3	50.61
CDY48943	Canola	nucleus	36.59	49.79
VIT_18s0076g00330.t01	Wine grape	nucleus	52.74	49.43
Solyc04g071160.2.1	Tomato	nucleus	50.91	48.97
PGSC0003DMT400002100	Potato	nucleus	50.3	48.53
Bra034916.1-P	Field mustard	nucleus, plastid	37.8	47.15
KRH70316	Soybean	nucleus	46.34	46.06
Bra032191.1-P	Field mustard	nucleus	46.04	45.76
CDY30752	Canola	nucleus	46.04	45.76
AT1G43700.1	Thale cress	nucleus	45.73	43.99
CDX80722	Canola	nucleus	42.68	43.48
CDY71925	Canola	nucleus	32.62	42.13
Os03t0336200-02	Rice	nucleus	37.5	37.39
Os09t0516200-01	Rice	nucleus	40.55	35.0
KRH08713	Soybean	nucleus	44.21	34.04
Os10t0531900-01	Rice	nucleus	34.45	28.25
Os01t0756200-01	Rice	nucleus	21.04	26.04
Os03t0127500-00	Rice	nucleus	33.54	25.82
Os08t0543900-00	Rice	nucleus	33.84	23.92
Os04t0181300-00	Rice	nucleus	25.61	19.72
Os01t0211800-01	Rice	extracellular, nucleus	18.6	18.48
Os12t0194600-01	Rice	nucleus	20.43	18.16
Os11t0218000-01	Rice	nucleus	20.12	18.13
Os09t0520400-01	Rice	nucleus	20.73	15.25
Os02t0538900-01	Rice	mitochondrion, nucleus	13.72	13.8

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:4351576	ProteinID:ABA96550.1	ProteinID:BAF29243.1	ProteinID:BAT16000.1
ncoils:Coil	ProteinID:EAZ19738.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EnsemblPlantsGene:Os12g0162500	EnsemblPlants:Os12t0162500-01	PFAM:PF00170
PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	UniProt:Q2QXC3	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI00006819C7	RefSeq:XP_015618202.1	InterPro:bZIP	SEG:seg	:	:

Description

REPRESSION OF SHOOT GROWTHSimilar to BZIP-like protein. (Os12t0162500-01)

Coordinates

chr12:+:3153113..3156795

Molecular Weight (calculated)

35126.1 Da

IEP (calculated)

7.044

GRAVY (calculated)

-0.780

Length

328 amino acids

Sequence
(BLAST)

001: MDGRFPLPPA SGGGRGHHRR AHSETFLRLP DADLLLDPEG DFSFSDLDFP SLSDDSPAIS DPTPPPPPPM AATPAPAPRP PGGAHMRSLS LDTAFFEGFS
101: LQGGGGGGGG GGSGGSGGHK RSGSMDGVNS PFEGESALSG GLPDYAKKAM PAERIAELAL IDPKRAKRIL ANRQSAARSK ERKIKYTSEL ERKVQTLQTE
201: ATTLSAQLTL LQRDTSGLTA ENRELKLRLQ SMEEQAKLRD ALNEALREEV QRLKIAAGQA PNMNGNPFNG GLQQQIPPYY TQQQQQQQQM PYLGGHHAQQ
301: RHPSHQQSSS NGGQSLSGQS LNDSMDFM

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.